--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/viscorvar_circlecor.xml	Fri Oct 23 10:15:56 2020 +0000
@@ -0,0 +1,150 @@
+<tool id="viscorvar_circlecor" name="visCorVar circleCor" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
+
+    <description>plots a correlation circle for the datasets whose correlation circles can be superimposed. This correlation circle contains the selected variables of these datasets which are included in a rectangle and the response variables.</description>
+
+    <macros>
+        <import>macros.xml</import>
+        <import>macros_viscorvar.xml</import>
+    </macros>
+
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+
+    <command detect_errors="aggressive"><![CDATA[
+
+        @COMMAND_RSCRIPT@/viscorvar_circlecor.R
+
+        --input_rdata ${input_rdata}
+
+        --blocks_vec ${select_blocks.value}
+        --responses_var ${select_responses_var}
+        --x_min ${x_min}
+        --x_max ${x_max}
+        --y_min ${y_min}
+        --y_max ${y_max}
+
+        --output_var ${output_var}
+        --output_pdf ${output_pdf}
+
+        @COMMAND_LOG_EXIT@
+
+    ]]></command>
+
+    <inputs>
+        <param name="input_rdata" type="data" format="rdata"
+               label="Input RData file"
+               help="output RData from matCorAddVar"/>
+        <param name="blocks_vec_list" type="data" format="tabular"
+               label="List of blocks vector."
+               help="output *_blocks_comb.tsv file from matCorAddVar"/>
+        <param name="select_blocks" type="select"
+               label="Blocks"
+               help="list of the blocks that are to be superimposed">
+            <options from_dataset="blocks_vec_list">
+                <column name="value" index="0"/>
+                <filter type="unique_value" column="0"/>
+                <filter type="sort_by" name="sorted_value" column="0"/>
+            </options>
+        </param>
+        <param name="responses_var_list" type="data" format="tabular"
+               label="List of response variables"
+               help="output *_response_var.tsv file from matCorAddVar"/>
+        <param name="select_responses_var" type="select" display="checkboxes"
+               multiple="true" label="Response variables"
+               help="select the response variables which will be plotted in the correlation circle">
+        <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> -->
+            <options from_dataset="responses_var_list">
+                <column name="value" index="0"/>
+                <filter type="unique_value" column="0"/>
+                <filter type="sort_by" name="sorted_value" column="0"/>
+            </options>
+        </param>
+        <param name="x_min" type="float" value="-1" min="-1" max="1"
+               label="X min" help="" />
+        <param name="x_max" type="float" value="1" min="-1" max="1"
+               label="X max" help="" />
+        <param name="y_min" type="float" value="-1" min="-1" max="1"
+               label="Y min" help="" />
+        <param name="y_max" type="float" value="1" min="-1" max="1"
+               label="Y max" help="" />
+    </inputs>
+
+    <outputs>
+        <data name="output_var" format="tabular" label="${tool.name}_selected_var.tsv" />
+        <data name="output_pdf" format="pdf" label="${tool.name}.pdf" />
+    </outputs>
+
+    <tests>
+    </tests>
+
+    <help><![CDATA[
+
+@HELP_AUTHORS@
+
+===================
+visCorVar circleCor
+===================
+
+-----------
+Description
+-----------
+
+Bla bla...
+
+-----------------
+Workflow position
+-----------------
+
+**Upstream tools**
+
+======================== ===================================== ========
+Name                     Output file                           Format
+======================== ===================================== ========
+visCorVar.matCorAddVar   viscorvar_matcoraddvar_output.RData   rdata
+======================== ===================================== ========
+
+**Downstream tools**
+
+====================== ====================================== =========
+Name                   Output file                            Format
+====================== ====================================== =========
+visCorVar.networkVar   viscorvar_circlecor_selected_var.tsv   tabular
+====================== ====================================== =========
+
+---------------------------------------------------
+
+-----------
+Input files
+-----------
+
++-------------------------------------------------------+-----------+
+| Parameter : num + label                               |  Format   |
++=======================================================+===========+
+| 1 : Rdata visCorVar.matCorAddVar output               |  rdata    |
++-------------------------------------------------------+-----------+
+| 2 : \*_blocks_comb.tsv visCorVar.matCorAddVar output   |  tabular  |
++-------------------------------------------------------+-----------+
+| 3 : \*_response_var.tsv visCorVar.matCorAddVar output  |  tabular  |
++-------------------------------------------------------+-----------+
+
+----------
+Parameters
+----------
+
+@HELP_MANUAL@
+
+------------
+Output files
+------------
+
+viscorvar_circlecor.pdf
+    Correlation circle pdf file
+
+viscorvar_circlecor_selected_var.tsv
+	List of variables selected in the correlation circle
+
+    ]]></help>
+
+    <expand macro="citations" />
+
+</tool>
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