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+# galaxy-mixomics-blocksplsda
+Galaxy wrappers for the block.splsda, plotIndiv and plotVar functions from the mixOmics R package
+
+# Install for developers
+
+Clone repository
+
+```
+$ git clone --recurse-submodules https://gitlab.com/bilille/galaxy-mixomics-blocksplsda.git
+```
+
+Add `galaxy-mixomics-blocksplsda` repository to `$GALAXYDIR/tools` directory.
+
+Edit `$GALAXYDIR/config/tool_conf.xml` and add:
+
+```
+<section id="development" name="Tools development">
+  <label id="mixomics_blocksplsda" name="mixOmics blocksplsda" />
+    <tool file="galaxy-mixomics-blocksplsda/mixomics_blocksplsda.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/mixomics_plotindiv.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/mixomics_plotvar.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/matCor_addVar.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/computeMatSimilarity.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/circleCor.xml" />
+    <tool file="galaxy-mixomics-blocksplsda/networkVar.xml" />
+</section>
+```
+
+# Preparing Galaxy conda manual environment for visCorVar
+
+Activate Galaxy self-installed conda (for your shell; bash here) and reload terminal
+
+```
+$ . $GALAXYDIR/database/dependencies/_conda/bin/conda init bash
+```
+
+Create and activate conda environment for visCorVar package
+
+```
+$ conda create --name __viscorvar@0.1 && conda activate __viscorvar@0.1
+```
+
+Install dependencies
+
+```
+$ conda install bioconductor-mixomics r-rdpack r-igraph
+```
+
+Manually install visCorVar package from repository
+
+```
+$ R
+
+> install.packages("https://gitlab.com/bilille/mixomics-blocksplsda-integration/-/raw/master/visCorVar_0.1.tar.gz", repos=NULL)
+> library(visCorVar)
+```
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