Mercurial > repos > ppericard > viscorvar
diff viscorvar_circlecor.xml @ 4:d4e9f7546dfa draft
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author | ppericard |
---|---|
date | Tue, 17 Nov 2020 13:01:44 +0000 |
parents | df8428358b7f |
children | 88c1fd2ac110 |
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--- a/viscorvar_circlecor.xml Fri Oct 23 11:26:18 2020 +0000 +++ b/viscorvar_circlecor.xml Tue Nov 17 13:01:44 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="viscorvar_circlecor" name="visCorVar circleCor" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true"> +<tool id="viscorvar_circlecor" name="visCorVar circleCor" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true"> <description>plots a correlation circle for the datasets whose correlation circles can be superimposed. This correlation circle contains the selected variables of these datasets which are included in a rectangle and the response variables.</description> @@ -29,17 +29,17 @@ @COMMAND_LOG_EXIT@ ]]></command> - <inputs> <param name="input_rdata" type="data" format="rdata" label="Input RData file" - help="output RData from matCorAddVar"/> + help="this is the RData output file from the matCorAddVar function"/> <param name="blocks_vec_list" type="data" format="tabular" label="List of blocks vector." - help="output *_blocks_comb.tsv file from matCorAddVar"/> + help="output *_blocks_comb.tsv file from matCorAddVar."/> <param name="select_blocks" type="select" label="Blocks" - help="list of the blocks that are to be superimposed"> + help="each element of List of blocks vector contain blocks for which selected variables can + be visualized in the correlation circle"> <options from_dataset="blocks_vec_list"> <column name="value" index="0"/> <filter type="unique_value" column="0"/> @@ -47,11 +47,11 @@ </options> </param> <param name="responses_var_list" type="data" format="tabular" - label="List of response variables" + label="List of response variables." help="output *_response_var.tsv file from matCorAddVar"/> <param name="select_responses_var" type="select" display="checkboxes" multiple="true" label="Response variables" - help="select the response variables which will be plotted in the correlation circle"> + help="choose the response variables which will be plotted in the correlation circle"> <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> --> <options from_dataset="responses_var_list"> <column name="value" index="0"/> @@ -89,7 +89,11 @@ Description ----------- -Bla bla... +This tool allows visualizing variables of omics datasets which are correlated with +the response variables thanks to correlation circles. The determination of the omics +datasets which can be visualized is made by the tool matCorAddVar. This tool performs +a zoom in a rectangle to retrieve omics datasets variables which are correlated with a +response variable. ----------------- Workflow position