Mercurial > repos > ppericard > viscorvar

view README.md @ 4:d4e9f7546dfa draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author ppericard
date Tue, 17 Nov 2020 13:01:44 +0000
parents c8533e9298e5
children
line wrap: on
line source

# galaxy-viscorvar

Galaxy wrappers for the visCorVar R package and selected functions from the mixOmics R package (block.splsda, plotIndiv and plotVar).

## Install from Toolshed

Install `viscorvar` repository from Galaxy ToolShed (owner: `ppericard`)

## Install for developers

Clone repository

```
$ git clone --recurse-submodules https://gitlab.com/bilille/galaxy-viscorvar.git
```

Add `galaxy-viscorvar` repository to `$GALAXYDIR/tools` directory.

Edit `$GALAXYDIR/config/tool_conf.xml` and add:

```
<section id="development" name="Tools development">
  <label id="viscorvar" name="visCorVar" />
    <tool file="galaxy-viscorvar/mixomics_blocksplsda.xml" />
    <tool file="galaxy-viscorvar/mixomics_plotindiv.xml" />
    <tool file="galaxy-viscorvar/mixomics_plotvar.xml" />
    <tool file="galaxy-viscorvar/viscorvar_matcoraddvar.xml" />
    <tool file="galaxy-viscorvar/viscorvar_circlecor.xml" />
    <tool file="galaxy-viscorvar/viscorvar_computematsimilarity.xml" />
    <tool file="galaxy-viscorvar/viscorvar_networkvar.xml" />
</section>
```