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comparison MSMS_Extractor.xml @ 7:8741bc3644d4 draft

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planemo upload
author pravs
date Wed, 09 Aug 2017 16:55:36 -0400
parents 2c3e2509e9bc
children 5a1ec6c352e3
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6:2c3e2509e9bc 7:8741bc3644d4
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2 <tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.1"> 2 <tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.2">
3 <description>Extract scans based on PSM report from the mzML file(s).</description> 3 <description>Extract scans based on PSM report from the mzML file(s).</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.0.9016">proteowizard</requirement> 5 <requirement type="package" version="3_0_9992">proteowizard</requirement>
6 <requirement type="package" version="3.4">pyteomics</requirement> 6 <requirement type="package" version="3.4">pyteomics</requirement>
7 </requirements> 7 </requirements>
8 <command interpreter="python"><![CDATA[MSMS_Extractor.py $spectrumfile $psmreportfile $output ${spectrumfile.name.rsplit('.',1)[0]} $removeretain.doremoveretain $removeretain.num_random_scans]]></command> 8 <command interpreter="python"><![CDATA[MSMS_Extractor.py $spectrumfile $psmreportfile $output ${spectrumfile.name.rsplit('.',1)[0]} $removeretain.doremoveretain $removeretain.num_random_scans]]></command>
9 <inputs> 9 <inputs>
10 <param name="spectrumfile" type="data" format="mzml"> 10 <param name="spectrumfile" type="data" format="mzml">