# HG changeset patch
# User pravs
# Date 1502312136 14400
# Node ID 8741bc3644d4027895d76f04dec6aad44d39886a
# Parent  2c3e2509e9bc894e0ad3513716a12c473b8bd72e
planemo upload

diff -r 2c3e2509e9bc -r 8741bc3644d4 MSMS_Extractor.xml
--- a/MSMS_Extractor.xml	Mon Aug 07 12:01:12 2017 -0400
+++ b/MSMS_Extractor.xml	Wed Aug 09 16:55:36 2017 -0400
@@ -1,8 +1,8 @@
 
-<tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.1">
+<tool id="MSMS_Extractor" name="MSMS_Extractor" version="1.1.2">
   <description>Extract scans based on PSM report from the mzML file(s).</description>
   <requirements>
-      <requirement type="package" version="3.0.9016">proteowizard</requirement>
+      <requirement type="package" version="3_0_9992">proteowizard</requirement>
       <requirement type="package" version="3.4">pyteomics</requirement>
   </requirements>
   <command interpreter="python"><![CDATA[MSMS_Extractor.py $spectrumfile $psmreportfile $output ${spectrumfile.name.rsplit('.',1)[0]} $removeretain.doremoveretain $removeretain.num_random_scans]]></command>
diff -r 2c3e2509e9bc -r 8741bc3644d4 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Aug 07 12:01:12 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="proteowizard" version="3.0.9016">
-    <repository changeset_revision="e9ae8f0be737" name="package_proteowizard_3_0_9016" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-</tool_dependency>