Mercurial > repos > proteomisc > gcms_lcms_analysis

diff tool_dependencies.xml @ 7:b84fe658fb48 draft default tip

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author proteomisc
date Sat, 16 May 2015 06:50:35 -0400
parents 8fa86fa43060
children
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--- a/tool_dependencies.xml	Sat May 16 05:29:17 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,31 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="R" version="3.0.3">
-        <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="xcms" version="1.44.0">
-      <install version="1.0">
-          <actions>
-              <action type="setup_r_environment">
-                  <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                      <package name="R" version="3.0.3" />
-                    </repository>
-    <package>http://cran.ms.unimelb.edu.au/src/contrib/Rcpp_0.11.6.tar.gz?raw=true</package>
-    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/BiocGenerics_0.14.0.tar.gz?raw=true</package>
-    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/Biobase_2.28.0.tar.gz?raw=true</package>
-    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/ProtGenerics_1.0.0.tar.gz?raw=true</package>
-    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.14.0.tar.gz?raw=true</package>
-    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/mzR_2.2.1.tar.gz?raw=true</package>
-    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/xcms_1.44.0.tar.gz?raw=true</package>
-               </action>
-            </actions>
-        </install>
-        <readme>
-            xcms is a package from Bioconductor containing all needed steps for GC-LCMS analysis begening with the preprocessing and ending with
-            the exploratory analysis.
-            integrated to the main galaxy toolshed by bensellak.taoufik@gmail.com for studies purpose and trainee ship on mass spectrometry 
-            analysis workflows and pipelines answering for some biological questions such as biomarquers identification extraction and  	
-            slection. targeted and untargeted (label free) quantification. 
-        </readme>
-    </package>
-</tool_dependency>