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6 @Manual{,
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7 title = {R: A Language and Environment for Statistical Computing},
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8 author = {{R Core Team}},
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9 organization = {R Foundation for Statistical Computing},
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10 address = {Vienna, Austria},
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11 year = {2017},
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12 url = {https://www.R-project.org/},
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13 }
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15 <citation type="bibtex">
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16 @Article{,
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17 title = {Passing in Command Line Arguments and Parallel Cluster/Multicore Batching in {R} with {batch}},
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18 author = {Thomas J. Hoffmann},
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19 journal = {Journal of Statistical Software, Code Snippets},
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20 year = {2011},
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21 volume = {39},
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22 number = {1},
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23 pages = {1--11},
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24 url = {http://www.jstatsoft.org/v39/c01/},
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25 }
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26 </citation>
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27 <citation type="bibtex">
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28 @Article{,
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29 author = {Laurent Gautier and Leslie Cope and Benjamin M. Bolstad and Rafael A. Irizarry},
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30 title = {affy---analysis of Affymetrix GeneChip data at the probe level},
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31 journal = {Bioinformatics},
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32 volume = {20},
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33 number = {3},
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34 year = {2004},
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35 issn = {1367-4803},
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36 pages = {307--315},
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37 doi = {10.1093/bioinformatics/btg405},
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38 publisher = {Oxford University Press},
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39 address = {Oxford, UK},
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40 }
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41 </citation>
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42 <citation type="bibtex">
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43 @Article{,
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44 author = {Matthew E Ritchie and Belinda Phipson and Di Wu and Yifang Hu and Charity W Law and Wei Shi and Gordon K Smyth},
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45 title = {{limma} powers differential expression analyses for {RNA}-sequencing and microarray studies},
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46 journal = {Nucleic Acids Research},
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47 year = {2015},
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48 volume = {43},
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49 number = {7},
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50 pages = {e47},
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51 }
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52 </citation>
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53 <citation type="bibtex">
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54 @Article{,
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55 title = {Quality assessment for short oligonucleotide arrays.},
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56 author = {Julia Brettschneider and Francois Collin and Benjamin M Bolstad and Terence P Speed},
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57 journal = {Technometrics},
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58 year = {2007},
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59 volume = {In press},
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60 }
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61 </citation>
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62 <citation type="bibtex">
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63 @Manual{,
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64 title = {annotate: Annotation for microarrays},
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65 author = {R. Gentleman},
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66 year = {2017},
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67 note = {R package version 1.56.0},
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68 }
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70 <citation type="bibtex">
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71 @Manual{,
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72 title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
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73 author = {Yihui Xie},
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74 year = {2017},
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75 note = {R package version 1.16},
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76 url = {http://yihui.name/knitr/},
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77 }
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78 </citation>
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79 <citation type="bibtex">
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80 @Manual{,
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81 title = {marray: Exploratory analysis for two-color spotted microarray data},
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82 author = {Yee Hwa Yang with contributions from Agnes Paquet and Sandrine Dudoit.},
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83 year = {2009},
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84 note = {R package version 1.58.0},
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85 url = {http://www.maths.usyd.edu.au/u/jeany/},
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86 }
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87 </citation>
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88 <citation type="bibtex">
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89 @Manual{,
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90 title = {IDPmisc: Utilities of Institute of Data Analyses and Process Design
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91 (www.idp.zhaw.ch)},
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92 author = {Rene Locher and Andreas Ruckstuhl et al.},
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93 year = {2012},
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94 note = {R package version 1.1.17},
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95 url = {https://CRAN.R-project.org/package=IDPmisc},
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96 }
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97 </citation>
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98 <citation type="bibtex">
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99 @Manual{,
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100 title = {KernSmooth: Functions for Kernel Smoothing Supporting Wand and Jones (1995)},
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101 author = {Matt Wand},
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102 year = {2015},
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103 note = {R package version 2.23-15},
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104 url = {https://CRAN.R-project.org/package=KernSmooth},
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105 }
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107
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