Mercurial > repos > proteomisc > preprocess_dataset

comparison preprocess_datasets/Affymetrix_Preprocessing.R @ 22:2f468dd9ea39 draft

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author proteomisc
date Sun, 03 Dec 2023 17:20:30 +0000
parents 5d481ae1b76c
children adbd4545d00d
comparison
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21:5d481ae1b76c 22:2f468dd9ea39
84 png(filename = "densities_plot_after_NM.png",width = w, height = h) 84 png(filename = "densities_plot_after_NM.png",width = w, height = h)
85 plotDensities(exprs(Prepro_object$data.norm),log=T) 85 plotDensities(exprs(Prepro_object$data.norm),log=T)
86 dev.off() 86 dev.off()
87 AffymetrixRmd=file_path("Affymetrix.Rmd") 87 AffymetrixRmd=file_path("Affymetrix.Rmd")
88 Style=file_path("look.css") 88 Style=file_path("look.css")
89 suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style))) 89 suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T)))
90 rm(listArguments) 90 rm(listArguments)
91 save.image("MicroArray.Preprocessing.RData") 91 save.image("MicroArray.Preprocessing.RData")
92 sink() 92 sink()
93 sink() 93 sink()