Mercurial > repos > proteomisc > preprocess_dataset

comparison preprocess_datasets/Affymetrix_Preprocessing.R @ 30:9d2343a87802 draft

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Uploaded
author proteomisc
date Tue, 05 Dec 2023 12:22:50 +0000
parents d0f05795e9b0
children 7091181c9a9b
comparison
equal deleted inserted replaced
29:d0f05795e9b0 30:9d2343a87802
81 invisible(dev.off()) 81 invisible(dev.off())
82 82
83 AffymetrixRmd=file_path("Affymetrix.Rmd") 83 AffymetrixRmd=file_path("Affymetrix.Rmd")
84 Style=file_path("look.css") 84 Style=file_path("look.css")
85 suppressWarnings(suppressMessages(knit(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T))) 85 suppressWarnings(suppressMessages(knit(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T)))
86 suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T)))
86 #suppressWarnings(suppressMessages(markdownToHTML(AffymetrixRmd,output="PreprocessingPlots.html", stylesheet=Style))) 87 #suppressWarnings(suppressMessages(markdownToHTML(AffymetrixRmd,output="PreprocessingPlots.html", stylesheet=Style)))
87 #suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T))) 88 #suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T)))
88 rm(listArguments) 89 rm(listArguments)
89 save.image("MicroArray.Preprocessing.RData") 90 save.image("MicroArray.Preprocessing.RData")
90 sink() 91 sink()