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comparison preprocess_datasets/TwoColors.Rmd @ 27:b5eac045873c draft

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author proteomisc
date Mon, 04 Dec 2023 12:41:06 +0000
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26:a085ddc4cb46 27:b5eac045873c
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322 </style>
323 </head>
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325 <div class="tpR">
326 <h1>Preprocessing</h1>
327 <p>
328 Preprocessing of an `r datasetsource` DataSet, issued from
329 `r technology`
330 technology.
331 </p>
332 <h2>Used methods for each step</h2>
333
334 <h3>Background correction methods</h3>
335 <pre>method : `r listArguments[["methodBC"]]`</pre>
336 <h3>Normalization methods</h3>
337 <pre>methodNWA : `r listArguments[["methodNWA"]]`</pre>
338 <pre>methodNBA : `r listArguments[["methodNBA"]]`</pre>
339 <h2>Boxplots</h2>
340 <h3>Before BG</h3>
341 <p>
342 <br>
343 <img src="boxplot_before_BG.png" width="100%" height="auto">
344 <br>
345 </p>
346 <h3>After BG, NWA and NBA</h3>
347 <p>
348 <br>
349 <img src="boxplot_after_BG.png" width="100%" height="auto">
350 <br>
351 </p>
352 <p>
353 <br>
354 <img src="boxplot_after_NWA.png" width="100%" height="auto">
355 <br>
356 </p>
357 <p>
358 <br>
359 <img src="boxplot_after_NBA.png" width="100%" height="auto">
360 <br>
361 </p>
362 <h2>MA plots</h2>
363 <p>
364 <br>
365 <img src="MA_plot.png" width="100%" height="auto">
366 <br>
367 </p>
368 <h2>Densities plot</h2>
369 <h3>Before BG</h3>
370 <p>
371 <br>
372 <img src="densities_plot_before_BG.png" width="100%" height="auto">
373 <br>
374 </p>
375 <h3>After BG and NWA</h3>
376 <p>
377 <br>
378 <img src="densities_plot_after_BG.png" width="100%" height="auto">
379 <br>
380 </p>
381 <p>
382 <br>
383 <img src="densities_plot_after_NWA.png" width="100%" height="auto">
384 <br>
385 </p>
386 </body>
387 </html>