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comparison preprocess_datasets/Preprocess_DataSet.xml @ 13:d4dab915d586 draft

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author proteomisc
date Sun, 03 Dec 2023 14:41:48 +0000
parents a847ef7aa259
children 0d544d449cca
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12:a847ef7aa259 13:d4dab915d586
1 <tool id="Preprocess_DataSet" name="Preprocess MicroArrays DataSets" version="5"> 1 <tool id="Preprocess_DataSet" name="Preprocess MicroArrays DataSets" version="6">
2 <description> Preprocessing microarrays datasets.Contains Background Correction, Normalization within arrays, between arrays (depending on the number of channels) and summarization. </description> 2 <description> Preprocessing microarrays datasets.Contains Background Correction, Normalization within arrays, between arrays (depending on the number of channels) and summarization. </description>
3 <macros> 3 <macros>
4 <import>citations.xml</import> 4 <import>citations.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package">bioconductor-biocinstaller</requirement>
7 <requirement type="package">r-base</requirement> 8 <requirement type="package">r-base</requirement>
8 <requirement type="package">r-batch</requirement> 9 <requirement type="package">r-batch</requirement>
9 <requirement type="package">bioconductor-affyplm</requirement> 10 <requirement type="package">bioconductor-affyplm</requirement>
10 <requirement type="package">bioconductor-affy</requirement> 11 <requirement type="package">bioconductor-affy</requirement>
11 <requirement type="package">bioconductor-annotate</requirement> 12 <requirement type="package">bioconductor-annotate</requirement>
15 <requirement type="package">r-kernsmooth</requirement> 16 <requirement type="package">r-kernsmooth</requirement>
16 <requirement type="package">r-rmarkdown</requirement> 17 <requirement type="package">r-rmarkdown</requirement>
17 <requirement type="package">r-markdown</requirement> 18 <requirement type="package">r-markdown</requirement>
18 <requirement type="package">bioconductor-limma</requirement> 19 <requirement type="package">bioconductor-limma</requirement>
19 <requirement type="package">r-idpmisc</requirement> 20 <requirement type="package">r-idpmisc</requirement>
20 <requirement type="package">bioconductor-biocinstaller</requirement>
21 </requirements> 21 </requirements>
22 <stdio> 22 <stdio>
23 <exit_code range="1:" level="fatal" /> 23 <exit_code range="1:" level="fatal" />
24 </stdio> 24 </stdio>
25 <command> 25 <command>