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comparison preprocess_datasets/Affymetrix.Rmd @ 0:ebf6607b4e6a draft

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author proteomisc
date Sat, 02 Dec 2023 14:15:26 +0000
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322 </style>
323 </head>
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326 <h1>Preprocessing</h1>
327 <p>
328 Preprocessing of an `r datasetsource` DataSet, issued from
329 `r technology`
330 technology.
331 </p>
332 <h2>Used methods for each step</h2>
333
334 <h3>Background correction methods</h3>
335 <pre>method : `r listArguments[["backgroundcorrection_method"]]`</pre>
336 <h3>Normalization methods</h3>
337 <pre>method : `r listArguments[["normalization_method"]]`</pre>
338 <h3>Summarization methods</h3>
339 <pre>method : `r listArguments[["summary_method"]]`</pre>
340 <h2>Boxplots</h2>
341 <h3>Before NM</h3>
342 <p>
343 <br>
344 <img src="boxplot_before_NM.png" width="100%" height="auto">
345 <br>
346 </p>
347 <h3>After NM</h3>
348 <p>
349 <br>
350 <img src="boxplot_after_NM.png" width="100%" height="auto">
351 <br>
352 </p>
353 <h2>MA plots</h2>
354 <p>
355 <br>
356 <img src="MA_plot.png" width="100%" height="auto">
357 <br>
358 </p>
359 <h2>Densities plot</h2>
360 <h3>Before NM</h3>
361 <p>
362 <br>
363 <img src="densities_plot_before_NM.png" width="100%" height="auto">
364 <br>
365 </p>
366 <h3>After NM</h3>
367 <p>
368 <br>
369 <img src="densities_plot_after_NM.png" width="100%" height="auto">
370 <br>
371 </p>
372 </body>
373 </html>