Mercurial > repos > proteomisc > preprocess_dataset

diff preprocess_datasets/Affymetrix_Preprocessing.R @ 21:5d481ae1b76c draft

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author proteomisc
date Sun, 03 Dec 2023 17:08:48 +0000
parents d05e52d7904d
children 2f468dd9ea39
line wrap: on
line diff
--- a/preprocess_datasets/Affymetrix_Preprocessing.R	Sun Dec 03 16:50:44 2023 +0000
+++ b/preprocess_datasets/Affymetrix_Preprocessing.R	Sun Dec 03 17:08:48 2023 +0000
@@ -1,5 +1,6 @@
-options(show.error.messages=F, error=function(){cat(geterrmessage(),file=stderr());q("no",1,F)})
+options(show.error.messages=F,warn=-1, error=function(){cat(geterrmessage(),file=stderr());q("no",1,F)})
 sink(stdout(), type = "message")
+sink(stdout() ,type = "output")
 suppressWarnings(suppressMessages(library(affy)))
 suppressWarnings(suppressMessages(library(affyPLM)))
 suppressWarnings(suppressMessages(library(batch)))
@@ -88,3 +89,5 @@
 suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 rm(listArguments)
 save.image("MicroArray.Preprocessing.RData")
+sink()
+sink()