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diff preprocess_datasets/Affymetrix.Rmd @ 0:ebf6607b4e6a draft

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author proteomisc
date Sat, 02 Dec 2023 14:15:26 +0000
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children 3744b476edc9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/preprocess_datasets/Affymetrix.Rmd	Sat Dec 02 14:15:26 2023 +0000
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+<h1>Preprocessing</h1>
+<p>
+Preprocessing of an `r datasetsource` DataSet, issued from 
+`r technology` 
+technology.  
+</p>
+<h2>Used methods for each step</h2>
+
+<h3>Background correction methods</h3>
+<pre>method : `r listArguments[["backgroundcorrection_method"]]`</pre>
+<h3>Normalization methods</h3>
+<pre>method : `r listArguments[["normalization_method"]]`</pre>
+<h3>Summarization methods</h3>
+<pre>method : `r listArguments[["summary_method"]]`</pre>
+<h2>Boxplots</h2>
+<h3>Before NM</h3>
+<p>
+<br>
+<img src="boxplot_before_NM.png" width="100%" height="auto">
+<br>
+</p>
+<h3>After NM</h3>
+<p>
+<br>
+<img src="boxplot_after_NM.png" width="100%" height="auto">
+<br>
+</p>
+<h2>MA plots</h2>
+<p>
+<br>
+<img src="MA_plot.png" width="100%" height="auto">
+<br>
+</p>
+<h2>Densities plot</h2>
+<h3>Before NM</h3>
+<p>
+<br>
+<img src="densities_plot_before_NM.png" width="100%" height="auto">
+<br>
+</p>
+<h3>After NM</h3>
+<p>
+<br>
+<img src="densities_plot_after_NM.png" width="100%" height="auto">
+<br>
+</p>
+</body>
+</html>