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author proteomisc
date Sat, 02 Dec 2023 15:48:52 +0000
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  <title>Preprocessing Plots Before and After</title>
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</head>
<body>
<div class="tpR">
<h1>Preprocessing</h1>
<p>
Preprocessing of an `r datasetsource` DataSet, issued from 
`r technology` 
technology.  
</p>
<h2>Used methods for each step</h2>

<h3>Background correction methods</h3>
<pre>method : `r listArguments[["methodBC"]]`</pre>
<h3>Normalization methods</h3>
<pre>methodNWA : `r listArguments[["methodNWA"]]`</pre>
<pre>methodNBA : `r listArguments[["methodNBA"]]`</pre>
<h2>Boxplots</h2>
<h3>Before BG</h3>
<p>
<br>
<img src="boxplot_before_BG.png" width="100%" height="auto">
<br>
</p>
<h3>After BG, NWA and NBA</h3>
<p>
<br>
<img src="boxplot_after_BG.png" width="100%" height="auto">
<br>
</p>
<p>
<br>
<img src="boxplot_after_NWA.png" width="100%" height="auto">
<br>
</p>
<p>
<br>
<img src="boxplot_after_NBA.png" width="100%" height="auto">
<br>
</p>
<h2>MA plots</h2>
<p>
<br>
<img src="MA_plot.png" width="100%" height="auto">
<br>
</p>
<h2>Densities plot</h2>
<h3>Before BG</h3>
<p>
<br>
<img src="densities_plot_before_BG.png" width="100%" height="auto">
<br>
</p>
<h3>After BG and NWA</h3>
<p>
<br>
<img src="densities_plot_after_BG.png" width="100%" height="auto">
<br>
</p>
<p>
<br>
<img src="densities_plot_after_NWA.png" width="100%" height="auto">
<br>
</p>
</body>
</html>