# HG changeset patch # User proteomisc # Date 1702323462 0 # Node ID 0aa849aec11ef8e4f226ad82bc58bf728cc001ee # Parent 69a0a1cd02f5bb1e5987a43cab0f2ad87e535a92 Uploaded diff -r 69a0a1cd02f5 -r 0aa849aec11e preprocess_datasets/Affymetrix.Rmd --- a/preprocess_datasets/Affymetrix.Rmd Mon Dec 11 19:26:45 2023 +0000 +++ b/preprocess_datasets/Affymetrix.Rmd Mon Dec 11 19:37:42 2023 +0000 @@ -1,57 +1,373 @@ - - - - - Preprocessing Plots Before and After + + + Preprocessing Plots Before and After +
-

Preprocessing

-

- Preprocessing of an `r datasetsource` DataSet, issued from - `r technology` - technology. -

-

Used methods for each step

+

Preprocessing

+

+Preprocessing of an `r datasetsource` DataSet, issued from +`r technology` +technology. +

+

Used methods for each step

-

Background correction methods

- 
method : `r listArguments[["backgroundcorrection_method"]]`
-

Normalization methods

- 
method : `r listArguments[["normalization_method"]]`
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Summarization methods

- 
method : `r listArguments[["summary_method"]]`
-

Boxplots

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Before NM

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- -
-

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After NM

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-
- -
-

-

MA plots

-

-
- -
-

-

Densities plot

-

Before NM

-

-
- -
-

-

After NM

-

-
- -
-

-
+

Background correction methods

+
method : `r listArguments[["backgroundcorrection_method"]]`
+

Normalization methods

+
method : `r listArguments[["normalization_method"]]`
+

Summarization methods

+
method : `r listArguments[["summary_method"]]`
+

Boxplots

+

Before NM

+

+
+ +
+

+

After NM

+

+
+ +
+

+

MA plots

+

+
+ +
+

+

Densities plot

+

Before NM

+

+
+ +
+

+

After NM

+

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+ +
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