# HG changeset patch # User proteomisc # Date 1702297018 0 # Node ID 1367e5b24925d09003ac836fd98e99e2605318bd # Parent 3744b476edc98551e78f4bb1d97a1d5ac68ac251 Uploaded diff -r 3744b476edc9 -r 1367e5b24925 preprocess_datasets/Affymetrix.Rmd --- a/preprocess_datasets/Affymetrix.Rmd Mon Dec 11 11:58:11 2023 +0000 +++ b/preprocess_datasets/Affymetrix.Rmd Mon Dec 11 12:16:58 2023 +0000 @@ -1,91 +1,57 @@ - + + - -Preprocessing Plots Before and After - + + Preprocessing Plots Before and After
-

Preprocessing

-

-Preprocessing of an `r datasetsource` DataSet, issued from -`r technology` -technology. -

-

Used methods for each step

+

Preprocessing

+

+ Preprocessing of an `r datasetsource` DataSet, issued from + `r technology` + technology. +

+

Used methods for each step

-

Background correction methods

-
method : `r listArguments[["backgroundcorrection_method"]]`
-

Normalization methods

-
method : `r listArguments[["normalization_method"]]`
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Summarization methods

-
method : `r listArguments[["summary_method"]]`
-

Boxplots

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Before NM

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After NM

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MA plots

-

-
- -
-

-

Densities plot

-

Before NM

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-
- -
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After NM

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-
- -
-

+

Background correction methods

+
method : `r listArguments[["backgroundcorrection_method"]]`
+

Normalization methods

+
method : `r listArguments[["normalization_method"]]`
+

Summarization methods

+
method : `r listArguments[["summary_method"]]`
+

Boxplots

+

Before NM

+

+
+ +
+

+

After NM

+

+
+ +
+

+

MA plots

+

+
+ +
+

+

Densities plot

+

Before NM

+

+
+ +
+

+

After NM

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+ +
+

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- + \ No newline at end of file