# HG changeset patch
# User proteomisc
# Date 1701694032 0
# Node ID 183b24bc8574100d68b3d96235cd481b33c53d4f
# Parent  b5eac045873c20575570ac1a93cdb94280a37cd8
Uploaded

diff -r b5eac045873c -r 183b24bc8574 preprocess_datasets/Affymetrix_Preprocessing.R
--- a/preprocess_datasets/Affymetrix_Preprocessing.R	Mon Dec 04 12:41:06 2023 +0000
+++ b/preprocess_datasets/Affymetrix_Preprocessing.R	Mon Dec 04 12:47:12 2023 +0000
@@ -82,7 +82,7 @@
 
 AffymetrixRmd=file_path("Affymetrix.Rmd")
 Style=file_path("look.css")
-suppressWarnings(suppressMessages(markdownToHTML(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
+suppressWarnings(suppressMessages(markdownToHTML(AffymetrixRmd,output="PreprocessingPlots.html", stylesheet=Style)))
 #suppressWarnings(suppressMessages(knit2html(AffymetrixRmd,output="PreprocessingPlots.html",quiet = T)))
 rm(listArguments)
 save.image("MicroArray.Preprocessing.RData")
diff -r b5eac045873c -r 183b24bc8574 preprocess_datasets/Agilent_One_Color_Preprocessing.R
--- a/preprocess_datasets/Agilent_One_Color_Preprocessing.R	Mon Dec 04 12:41:06 2023 +0000
+++ b/preprocess_datasets/Agilent_One_Color_Preprocessing.R	Mon Dec 04 12:47:12 2023 +0000
@@ -81,7 +81,7 @@
 
 OneColorRmd=file_path("OneColor.Rmd")
 Style=file_path("look.css")
-suppressWarnings(suppressMessages(markdownToHTML(OneColorRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
+suppressWarnings(suppressMessages(markdownToHTML(OneColorRmd,output="PreprocessingPlots.html", stylesheet=Style)))
 #suppressWarnings(suppressMessages(markdownToHTML(OneColorRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 # suppressWarnings(suppressMessages(knit2html(OneColorRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 rm(listArguments)
diff -r b5eac045873c -r 183b24bc8574 preprocess_datasets/Agilent_Two_Colors_Preprocessing.R
--- a/preprocess_datasets/Agilent_Two_Colors_Preprocessing.R	Mon Dec 04 12:41:06 2023 +0000
+++ b/preprocess_datasets/Agilent_Two_Colors_Preprocessing.R	Mon Dec 04 12:47:12 2023 +0000
@@ -113,7 +113,7 @@
 
 TwoColorsRmd=file_path("TwoColors.Rmd")
 Style=file_path("look.css")
-suppressWarnings(suppressMessages(markdownToHTML(TwoColorsRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
+suppressWarnings(suppressMessages(markdownToHTML(TwoColorsRmd,output="PreprocessingPlots.html", stylesheet=Style)))
 #suppressWarnings(suppressMessages(knit2html(TwoColorsRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 rm(listArguments)
 save.image("MicroArray.Preprocessing.RData")
diff -r b5eac045873c -r 183b24bc8574 preprocess_datasets/GenePix_One_Color_Preprocessing.R
--- a/preprocess_datasets/GenePix_One_Color_Preprocessing.R	Mon Dec 04 12:41:06 2023 +0000
+++ b/preprocess_datasets/GenePix_One_Color_Preprocessing.R	Mon Dec 04 12:47:12 2023 +0000
@@ -83,7 +83,7 @@
 
 OneColorRmd=file_path("OneColor.Rmd")
 Style=file_path("look.css")
-suppressWarnings(suppressMessages(markdownToHTML(OneColorRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
+suppressWarnings(suppressMessages(markdownToHTML(OneColorRmd,output="PreprocessingPlots.html", stylesheet=Style)))
 #suppressWarnings(suppressMessages(knit2html(OneColorRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 rm(listArguments)
 save.image("MicroArray.Preprocessing.RData")
diff -r b5eac045873c -r 183b24bc8574 preprocess_datasets/GenePix_Two_Colors_Preprocessing.R
--- a/preprocess_datasets/GenePix_Two_Colors_Preprocessing.R	Mon Dec 04 12:41:06 2023 +0000
+++ b/preprocess_datasets/GenePix_Two_Colors_Preprocessing.R	Mon Dec 04 12:47:12 2023 +0000
@@ -108,7 +108,7 @@
 
 TwoColorsRmd=file_path("TwoColors.Rmd")
 Style=file_path("look.css")
-suppressWarnings(suppressMessages(markdownToHTML(TwoColorsRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
+suppressWarnings(suppressMessages(markdownToHTML(TwoColorsRmd,output="PreprocessingPlots.html", stylesheet=Style)))
 #suppressWarnings(suppressMessages(knit2html(TwoColorsRmd,output="PreprocessingPlots.html",quiet = T, stylesheet=Style)))
 rm(listArguments)
 save.image(file="MicroArray.Preprocessing.RData")