Mercurial > repos > proteomisc > preprocess_dataset
changeset 44:10e058addc0c draft
Uploaded
| author | proteomisc |
|---|---|
| date | Sat, 16 Dec 2023 15:56:31 +0000 |
| parents | dc0904796d06 |
| children | a738f5824d0b |
| files | preprocess_datasets/GenePix_Two_Colors_Preprocessing_Functions.R |
| diffstat | 1 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/preprocess_datasets/GenePix_Two_Colors_Preprocessing_Functions.R Sat Dec 16 13:29:28 2023 +0000 +++ b/preprocess_datasets/GenePix_Two_Colors_Preprocessing_Functions.R Sat Dec 16 15:56:31 2023 +0000 @@ -10,12 +10,11 @@ MAb$M=(data_mt) MAb$A=NaRV.omit(as.data.frame(MAb$A)) MAb$genes=(MAb$genes[(MAb$genes$ID %in% c(rownames(MAb$A),rownames(MAb$M))),]) - MA.avg <-suppressWarnings(suppressMessages(avereps(MAb, ID=MAb$genes$ID))) + MA.avg <-suppressWarnings(suppressMessages(avereps(MAb))) data_matrix=NaRV.omit(MA.avg$M) colnames(data_matrix)<-designo$sample write.table(format(data_matrix, justify="right"),sep="\t", quote=FALSE, row.names=T, col.names=T,file="Matrix.Data.tsv") return(make_design(MA_matrix=list(dataBG=RG,dataNWA=RG.pq,dataNBA=MA.avg,matrix_data=as.matrix(data_matrix),symbol=MA.avg$genes$Name))) -} - +} \ No newline at end of file