Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.xml @ 4:e967a99d66b3 draft

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"planemo upload commit 540dd383c0617193db43bf11457011888751b022-dirty"
author proteore
date Thu, 23 Jan 2020 08:38:02 -0500
parents af0250fd023c
children b05fa99ddda2
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3:af0250fd023c 4:e967a99d66b3
1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.09.05" tool_type="manage_data"> 1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.21" tool_type="manage_data">
2 <description> 2 <description>
3 to create or update reference files for proteore tools 3 to create or update reference files for proteore tools
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement--> 6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement-->
25 #end if 25 #end if
26 #else if $database.database == "nextprot" 26 #else if $database.database == "nextprot"
27 --database=$database.database 27 --database=$database.database
28 #end if 28 #end if
29 --output "$output" 29 --output "$output"
30 --tool_data_path=$__tool_data_path__
30 31
31 ]]></command> 32 ]]></command>
32 33
33 <inputs> 34 <inputs>
34 <conditional name="database"> 35 <conditional name="database">
41 </param> 42 </param>
42 <when value="human_protein_atlas"> 43 <when value="human_protein_atlas">
43 <param name="tissues" type="select" multiple="false" label="Please select tissue"> 44 <param name="tissues" type="select" multiple="false" label="Please select tissue">
44 <option value="HPA_normal_tissue">Normal tissue</option> 45 <option value="HPA_normal_tissue">Normal tissue</option>
45 <option value="HPA_pathology">Pathology</option> 46 <option value="HPA_pathology">Pathology</option>
46 <!--option value="HPA_full_atlas">Full Atlas</option--> 47 <option value="HPA_full_atlas">Full Atlas</option>
47 </param> 48 </param>
48 </when> 49 </when>
49 <when value="peptide_atlas"> 50 <when value="peptide_atlas">
50 <param name="tissues" type="select" multiple="false" label="Please select the tissue"> 51 <param name="tissues" type="select" multiple="false" label="Please select the tissue">
51 <option value="432.Human_Adrenal_gland">Human Adrenal gland proteome</option> 52 <option value="432.Human_Adrenal_gland">Human Adrenal gland proteome</option>