Mercurial > repos > proteore > proteore_filter_keywords_values
annotate filter_kw_val.xml @ 2:52a7afd01c6d draft
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
author | proteore |
---|---|
date | Tue, 18 Dec 2018 09:25:11 -0500 |
parents | cb9555653b09 |
children | 68cee865018e |
rev | line source |
---|---|
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
1 <tool id="MQoutputfilter" name="Filter by keywords and/or numerical value" version="2018.12.18"> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
2 <description></description> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
3 <requirements> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
4 </requirements> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
5 <stdio> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
6 <exit_code range="1:" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
7 </stdio> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
8 <command><![CDATA[ |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
9 python $__tool_directory__/filter_kw_val.py |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
10 -i "$input1,$header" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
11 -o "$output1" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
12 --filtered_file "$filtered_file" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
13 --operator "$operator" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
14 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
15 ## Keywords |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
16 #for $key in $keyword |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
17 #if $key.k.kw != "None" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
18 #if $key.k.kw == "text" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
19 --kw "$key.k.txt" "$key.ncol" "$key.match" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
20 #else if $key.k.kw == "file" |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
21 --kw_file "$key.k.file" "$key.k.header" "$key.k.ncol" "$key.ncol" "$key.match" |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
22 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
23 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
24 #end for |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
25 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
26 ## value to filter |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
27 #for $val in $value |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
28 #if $val.v.val != "None" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
29 --value |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
30 #if $val.v.val == "Equal" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
31 $val.v.equal "$val.ncol" "=" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
32 #else if $val.v.val == "Higher" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
33 $val.v.higher "$val.ncol" ">" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
34 #else if $val.v.val == "Equal or higher" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
35 $val.v.equal_higher "$val.ncol" ">=" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
36 #else if $val.v.val == "Lower" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
37 $val.v.lower "$val.ncol" "<" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
38 #else if $val.v.val == "Equal or lower" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
39 $val.v.equal_lower "$val.ncol" "<=" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
40 #else |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
41 $val.v.different "$val.ncol" "!=" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
42 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
43 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
44 #end for |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
45 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
46 ##range of values to keep |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
47 #for $vr in $values_range |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
48 #if vr |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
49 --values_range $vr.bottom_value $vr.top_value $vr.ncol $vr.inclusive |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
50 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
51 #end for |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
52 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
53 #if $sort_column != "" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
54 --sort_col "$sort_column,$reversed_sort" |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
55 #end if |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
56 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
57 ]]></command> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
58 <inputs> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
59 <param type="data" name="input1" format="txt,tabular" label="Input file" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
60 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does file contain header?" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
61 <param name="operator" type="select" label="Select an operator to combine your filters (if more than one)" help="OR : only one filter must be satisfied to filter a row, AND : all your filters must be satisfied to filter a row" > |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
62 <option value="OR" selected="True">OR</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
63 <option value="AND">AND</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
64 </param> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
65 |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
66 <repeat name="keyword" title="Filter by keywords" > |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
67 <param name="ncol" type="text" value="c1" label="Column number on which to apply the filter" help='For example, fill in "c1" if the keywords you want to filter out are listed in the first column' /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
68 <param type="boolean" name="match" truevalue="True" label="Search for exact match?" help='Choosing "Yes" will only filter out exact match (e.g. case sensitive), see help section' /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
69 <conditional name="k" > |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
70 <param name="kw" type="select" label="Enter keywords" > |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
71 <option value="text" selected="true">copy/paste</option> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
72 <option value="file">File containing keywords</option> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
73 </param> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
74 <when value="text" > |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
75 <param name="txt" type="text" label="Copy/paste keywords to be filtered out" help='Keywords must be separated by tab, space or carriage return into the form field, for example: A8K2U0 Q5TA79 O43175' > |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
76 <sanitizer> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
77 <valid initial="string.printable"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
78 <remove value="'"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
79 </valid> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
80 <mapping initial="none"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
81 <add source="'" target="__sq__"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
82 </mapping> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
83 </sanitizer> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
84 </param> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
85 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
86 <when value="file" > |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
87 <param name="file" type="data" format="txt,tabular" label="File containing keywords" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
88 <param name="ncol" type="text" value="c1" label="Specify the column containing keywords" help='For example, fill in "c1" if keywords are in the first column' /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
89 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does file contain header?" /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
90 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
91 </conditional> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
92 </repeat> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
93 <repeat name="value" title="Filter by numerical value" > |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
94 <param name="ncol" type="text" value="c1" label="Column number on which to apply the filter" help='For example, fill in "c1" if the keywords you want to filter out are listed in the first column' /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
95 <conditional name="v" > |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
96 <param argument="Numerical Value" type="select" label="Select operator" > |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
97 <option value="Equal">=</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
98 <option value="Higher">></option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
99 <option value="Equal or higher">>=</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
100 <option value="Lower"><</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
101 <option value="Equal or lower"><=</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
102 <option value="Different">!=</option> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
103 </param> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
104 <when value="Equal" > |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
105 <param name="equal" type="float" value="" label="Value" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
106 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
107 <when value="Higher" > |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
108 <param type="float" name="higher" value="" label="Value" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
109 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
110 <when value="Equal or higher" > |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
111 <param type="float" name="equal_higher" value="" label="Value" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
112 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
113 <when value="Lower" > |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
114 <param type="float" name="lower" value="" label="Value" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
115 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
116 <when value="Equal or lower" > |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
117 <param type="float" name="equal_lower" value="" label="Value" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
118 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
119 <when value="Different"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
120 <param type="float" name="different" value="" label="Value"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
121 </when> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
122 </conditional> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
123 </repeat> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
124 <repeat name="values_range" title="Filter by range of numerical values"> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
125 <param name="ncol" type="text" value="c1" label="Column number on which to apply the filter" help='For example, fill in "c1" if the keywords you want to filter out are listed in the first column' /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
126 <param name="bottom_value" type="float" value="" label="Enter the bottom value" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
127 <param name="top_value" type="float" value="" label="Enter the top value" /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
128 <param name="inclusive" type="boolean" label="inclusive range ?" checked="false" truevalue="true" falsevalue="false" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
129 </repeat> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
130 <param name="sort_column" type="text" value="" label="Sort result files by:" help="Fill in 'c1' if you want to sort your result file by the column 1 values" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
131 <param name="reversed_sort" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Sort in descending order ?"/> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
132 </inputs> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
133 <outputs> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
134 <data name="output1" format="tsv" label="${tool.name} on ${input1.name}" /> |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
135 <data name="filtered_file" format="tsv" label="${tool.name} on ${input1.name} - Filtered lines" /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
136 </outputs> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
137 <tests> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
138 <test> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
139 <param name="input1" value="Lacombe_et_al_2017_OK.txt" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
140 <param name="header" value="true" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
141 <param name="operator" value="OR"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
142 <param name="sort_column" value="c1"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
143 <param name="reversed_sort" value="false"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
144 <repeat name="keyword"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
145 <param name="ncol" value="c1" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
146 <param name="match" value="True" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
147 <conditional name="k"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
148 <param name="kw" value="text" /> |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
149 <param name="txt" value="P04264 P35908 P13645 Q5D862 Q5T749 Q8IW75 P81605 P22531 P59666 P78386" /> |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
150 </conditional> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
151 </repeat> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
152 <repeat name="value"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
153 <param name="ncol" value="c3"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
154 <conditional name="v"> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
155 <param name="val" value="Higher"/> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
156 <param name="higher" value="20" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
157 </conditional> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
158 </repeat> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
159 <output name="output1" file="output.csv" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
160 <output name="filtered_file" file="filtered_output.csv" /> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
161 </test> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
162 </tests> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
163 <help><![CDATA[ |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
164 **Description** |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
165 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
166 This tool allows to filter out data according to different criteria such as keywords (e.g. a list of contaminants) or numerical values (e.g. intensity measurements below a given threshold). |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
167 A boolean operator "OR/AND" allows to combine different type of filters making this tool very powerful. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
168 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
169 ----- |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
170 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
171 **Input** |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
172 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
173 A table (file in txt, tab, tsv, csv format) of your identification and/or quantification results for example. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
174 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
175 ----- |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
176 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
177 **Parameters** |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
178 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
179 **AND/OR operator** |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
180 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
181 As many filters as needed can be combined, you can choose how filters apply on your data by using the following boolean operators: |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
182 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
183 - OR: only one filter must be satisfied to remove one row |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
184 - AND: all filters must be satisfied to remove one row |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
185 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
186 ----- |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
187 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
188 **Filter by keyword(s)** |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
189 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
190 Click on the "Filter by keywords" box to use it. You can either fill in the field (copy/paste) or upload a file which contains the keywords. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
191 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
192 "Column number on which to apply the filter": You must then specify the column number of your input file on wich to apply the filter by keywords. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
193 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
194 - If you choose to fill in the field, the keywords should be separated by tab, space or carriage return into the form field, for example: A8K2U0 Q5TA79 O43175 |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
195 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
196 - If you choose to upload a file in a text format in which each line is a keyword, for example: |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
197 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
198 TRYP_PIG |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
199 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
200 ALDOA_RABBIT |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
201 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
202 LYSO_ECOLI |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
203 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
204 Lines that contains these keywords will be removed from input file. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
205 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
206 "Search for exact match?": Keywords search can be applied by performing either exact match or partial one by using the following option: |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
207 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
208 - If you choose **Yes**, only the fields that contains exactly the same content will be removed. |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
209 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
210 - If you choose **No**, all the fields containing the keyword will be removed. |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
211 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
212 Example: |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
213 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
214 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly the word "kinase" will be removed. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
215 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
216 **No** option (partial match) for "kinase": lines which contain "kinase" and lines with "alpha-kinase" (and so on) will be removed. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
217 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
218 ----- |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
219 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
220 **Filter by numerical values**: You can filter your data by a column of numerical values. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
221 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
222 "Column number on which to apply the filter": you must specify the column number of your input file on wich to apply the filter by numerical value. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
223 |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
224 Then select one of the operators in the list : |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
225 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
226 - = (equal) |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
227 - != (not equal) |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
228 - < (lower than) |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
229 - <= (lower than or equal to) |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
230 - > (greater than) |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
231 - >= (greater than or equal to) |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
232 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
233 Then enter the numerical threshold to apply by filling the "Value" box. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
234 If you choose > 10, each row containing a numerical value (in the chosen column of your input file) that correspond to your settings will be filtered out. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
235 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
236 ----- |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
237 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
238 **Filter by a range of values**: You can also set a range of values to filter your file. |
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
239 Conversely to the numeric filter, rows with numerical values within the defined range will be kept while rows with values out of this range will be filtered out. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
240 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
241 ----- |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
242 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
243 **Sort results files** |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
244 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
245 You can sort your results by column in ascending (default value) or descending by entering the column number on which to sort the data. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
246 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
247 ----- |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
248 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
249 **Output** |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
250 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
251 The tool returns two output files. |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
252 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
253 * A text file containing the results that pass your filters |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
254 |
2
52a7afd01c6d
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
proteore
parents:
1
diff
changeset
|
255 * A text file containing the rows removed from the input file (i.e. containing data taht do not pass your filter(s). |
0
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
256 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
257 ----- |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
258 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
259 .. class:: infomark |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
260 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
261 **Authors** |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
262 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
263 T.P. Lien Nguyen, David Christiany, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
264 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
265 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
266 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
267 This work has been partially funded through the French National Agency for Research (ANR) IFB project. |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
268 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
269 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
270 |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
271 ]]></help> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
272 <citations> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
273 </citations> |
a55e8b137c6b
planemo upload commit 688c456ca57914a63c20eba942ec5fe81e896099-dirty
proteore
parents:
diff
changeset
|
274 </tool> |