Mercurial > repos > proteore > proteore_filter_keywords_values
comparison filter_kw_val.xml @ 1:cb9555653b09 draft
planemo upload commit 576387120daa98b935be56dc7ae62b9bf1e8a7ff-dirty
| author | proteore |
|---|---|
| date | Fri, 21 Sep 2018 06:03:25 -0400 |
| parents | a55e8b137c6b |
| children | 52a7afd01c6d |
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| 0:a55e8b137c6b | 1:cb9555653b09 |
|---|---|
| 1 <tool id="MQoutputfilter" name="Filter by keywords or numerical value" version="2018.08.22"> | 1 <tool id="MQoutputfilter" name="Filter by keywords or numerical value" version="2018.09.21"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 </requirements> | 4 </requirements> |
| 5 <stdio> | 5 <stdio> |
| 6 <exit_code range="1:" /> | 6 <exit_code range="1:" /> |
| 56 | 56 |
| 57 ]]></command> | 57 ]]></command> |
| 58 <inputs> | 58 <inputs> |
| 59 <param type="data" name="input1" format="txt,tabular" label="Input file" help="Input file is a tab-delimited file containing proteomics identification and/or quantitative results" /> | 59 <param type="data" name="input1" format="txt,tabular" label="Input file" help="Input file is a tab-delimited file containing proteomics identification and/or quantitative results" /> |
| 60 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> | 60 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> |
| 61 <param name="operator" type="select" label="Please select an operator for your filters" help="OR : only one filter must be satisfied to filter a row, AND : all your filters must be satisfied to filter a row" > | 61 <param name="operator" type="select" label="Please select an operator to combine your filters (if more than one)" help="OR : only one filter must be satisfied to filter a row, AND : all your filters must be satisfied to filter a row" > |
| 62 <option value="OR" selected="True">OR</option> | 62 <option value="OR" selected="True">OR</option> |
| 63 <option value="AND">AND</option> | 63 <option value="AND">AND</option> |
| 64 </param> | 64 </param> |
| 65 <param name="sort_column" type="text" value="" label="If you want to sort the result files by values from a column, please enter a column number" help="For example : fill in 'c1' if you want to sort your result file by the column 1 values." /> | 65 <param name="sort_column" type="text" value="" label="If you want to sort the result files by values from a column, please enter a column number" help="For example : fill in 'c1' if you want to sort your result file by the column 1 values." /> |
| 66 <param name="reversed_sort" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Sort in descending order ?"/> | 66 <param name="reversed_sort" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Sort in descending order ?"/> |
| 67 <repeat name="keyword" title="Filter by keywords" > | 67 <repeat name="keyword" title="Filter by keywords" > |
| 68 <param name="ncol" type="text" value="c1" label="Please specify the column number of the input file on which you want to apply the filter" help='For example, fill in "c1" if the keywords you want to filter out are listed in the first column' /> | 68 <param name="ncol" type="text" value="c1" label="Please specify the column number of the input file on which you want to apply the filter" help='For example, fill in "c1" if the keywords you want to filter out are listed in the first column' /> |
| 69 <param type="boolean" name="match" truevalue="True" label="Would you like to search for exact match?" help='Choosing "Yes" will only filter out exact match (i.e. case sensitive), see below for more details' /> | 69 <param type="boolean" name="match" truevalue="True" label="Would you like to search for exact match?" help='Choosing "Yes" will only filter out exact match (i.e. case sensitive), see below for more details' /> |
| 70 <conditional name="k" > | 70 <conditional name="k" > |
| 71 <param argument="--kw" type="select" label="Filter by keyword" > | 71 <param argument="--kw" type="select" label="Filter by keyword" > |
| 72 <option value="None" selected="True">---</option> | 72 <option value="text" selected="true">Enter keywords (copy/paste)</option> |
| 73 <option value="text">Enter keywords (copy/paste)</option> | |
| 74 <option value="file">Choose a file containing keywords</option> | 73 <option value="file">Choose a file containing keywords</option> |
| 75 </param> | 74 </param> |
| 76 <when value="None" /> | 75 <when value="None" /> |
| 77 <when value="text" > | 76 <when value="text" > |
| 78 <param name="txt" type="text" label="Copy/paste keywords to be filtered out" help='Keywords should be separated by ";", for example: A8K2U0;Q5TA79;O43175' > | 77 <param name="txt" type="text" label="Copy/paste keywords to be filtered out" help='Keywords must be separated by ";", for example: A8K2U0;Q5TA79;O43175' > |
| 79 <sanitizer> | 78 <sanitizer> |
| 80 <valid initial="string.printable"> | 79 <valid initial="string.printable"> |
| 81 <remove value="'"/> | 80 <remove value="'"/> |
| 82 </valid> | 81 </valid> |
| 83 <mapping initial="none"> | 82 <mapping initial="none"> |