Mercurial > repos > proteore > proteore_filter_keywords_values
changeset 7:5621406a4d2f draft
planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
author | proteore |
---|---|
date | Fri, 28 Jun 2019 05:09:20 -0400 |
parents | b4641c0f8a82 |
children | 98cb671a92eb |
files | filter_kw_val.xml |
diffstat | 1 files changed, 9 insertions(+), 6 deletions(-) [+] |
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--- a/filter_kw_val.xml Mon Mar 11 09:14:42 2019 -0400 +++ b/filter_kw_val.xml Fri Jun 28 05:09:20 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="MQoutputfilter" name="Filter by keywords and/or numerical value" version="2019.03.11"> +<tool id="MQoutputfilter" name="Filter by keywords and/or numerical value" version="2019.06.27"> <description></description> <requirements> </requirements> @@ -59,7 +59,7 @@ <param name="ncol" type="text" value="c1" label="Column number on which to apply the filter" help='For example, fill in "c1" if you want to seek keywords in the first column (and keep or discard them)'> <validator type="regex" message="Please enter a column number, for example: 'c1' for the first column">[c]{0,1}[0-9]+</validator> </param> - <param type="boolean" name="match" truevalue="True" label="Search for exact match?" help='Choosing "Yes" will only filter out exact match (e.g. case sensitive), see help section' /> + <param type="boolean" name="match" truevalue="True" label="Search for exact match?" help='Choosing "Yes" will only filter out exact match, see help section' /> <conditional name="k" > <param name="kw" type="select" label="Enter keywords" > <option value="text" selected="true">copy/paste</option> @@ -118,8 +118,8 @@ </conditional> </inputs> <outputs> + <data name="discarded_lines" format="tsv" label="Filtered_${input1.name} - discarded_lines" /> <data name="kept_lines" format="tsv" label="Filtered_${input1.name}" /> - <data name="discarded_lines" format="tsv" label="Filtered_${input1.name} - discarded_lines" /> </outputs> <tests> <test> @@ -199,7 +199,7 @@ LYSO_ECOLI -Lines that contains these keywords will be removed from input file. +Lines that contains these keywords will be either removed (if "Discard" selected) or retained (if "Keep" selected) from input file. "Search for exact match?": Keywords search can be applied by performing either exact match or partial one by using the following option: @@ -207,12 +207,15 @@ - If you choose **No**, all the fields containing the keyword will be removed. +For both options, the filter is case insensitive (uppercase and lowercase are treated equally) + Example: **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly the word "kinase" will be removed. **No** option (partial match) for "kinase": lines which contain "kinase" and lines with "alpha-kinase" (and so on) will be removed. + ----- **Filter by numerical values**: You can filter your data by a column of numerical values. @@ -257,13 +260,13 @@ **Authors** -David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR +David Christiany, Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR This work has been partially funded through the French National Agency for Research (ANR) IFB project. -Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. +Help: contact@proteore.org for any questions or concerns about this tool. ]]></help> <citations>