Mercurial > repos > proteore > proteore_goprofiles

comparison goprofiles.xml @ 15:601027649251 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 6bc2c32177acd823d5025bc90a562e6e6b2a233a"
author proteore
date Tue, 06 Apr 2021 16:59:30 +0000
parents 45b4ede6940e
children
comparison
equal deleted inserted replaced
14:45b4ede6940e 15:601027649251
1 <tool id="goProfiles" name="Compute functional profiles" version="2020.01.23"> 1 <tool id="goProfiles" name="Compute functional profiles" version="2021.04.03">
2 <description>(Human, Mouse) [goProfiles]</description> 2 <description>(Human, Mouse) [goProfiles]</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" >R</requirement> 4 <requirement type="package" version="4.0.3">r-base</requirement>
5 <requirement type="package" version="3.8.2">bioconductor-org.hs.eg.db</requirement> 5 <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement>
6 <requirement type="package" version="3.8.2">bioconductor-org.mm.eg.db</requirement> 6 <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement>
7 <!--requirement type="package" version="3.5.0">bioconductor-org.rn.eg.db</requirement--> 7 <requirement type="package" version="1.52.0">bioconductor-annotationdbi</requirement>
8 <requirement type="package" version="1.46.0">bioconductor-annotationdbi</requirement> 8 <requirement type="package" version="2.50.0">bioconductor-biobase</requirement>
9 <requirement type="package" version="2.44.0">bioconductor-biobase</requirement> 9 <requirement type="package" version="3.12.1">bioconductor-go.db</requirement>
10 <requirement type="package" version="1.46.0">bioconductor-goprofiles</requirement> 10 <requirement type="package" version="1.52.0">bioconductor-goprofiles</requirement>
11
12 </requirements> 11 </requirements>
13 <stdio> 12 <stdio>
14 <exit_code range="1:" /> 13 <exit_code range="1:" />
15 </stdio> 14 </stdio>
16 <command><![CDATA[ 15 <command><![CDATA[
133 <param name="level" value="2" /> 132 <param name="level" value="2" />
134 <param name="per" value="true" /> 133 <param name="per" value="true" />
135 <param name="title" value="Test" /> 134 <param name="title" value="Test" />
136 <param name="plot_opt" value="PDF" /> 135 <param name="plot_opt" value="PDF" />
137 <output_collection name="output" type="list" > 136 <output_collection name="output" type="list" >
138 <element name="profile.BP.pdf" file="profile.BP.pdf" ftype="pdf" compare="sim_size"/> 137 <element name="profile_BP.pdf" file="profile.BP.pdf" ftype="pdf" compare="sim_size"/>
139 <element name="profile.CC.pdf" file="profile.CC.pdf" ftype="pdf" compare="sim_size"/> 138 <element name="profile_CC.pdf" file="profile.CC.pdf" ftype="pdf" compare="sim_size"/>
140 <element name="profile.MF.pdf" file="profile.MF.pdf" ftype="pdf" compare="sim_size"/> 139 <element name="profile_MF.pdf" file="profile.MF.pdf" ftype="pdf" compare="sim_size"/>
141 </output_collection> 140 </output_collection>
142 <output name="log" file="GO_Profile_text_output.tsv"/> 141 <output name="log" file="GO_Profile_text_output.tsv"/>
143 </test> 142 </test>
144 </tests> 143 </tests>
145 <help><![CDATA[ 144 <help><![CDATA[
181 ----- 180 -----
182 181
183 .. class:: infomark 182 .. class:: infomark
184 183
185 Packages used: 184 Packages used:
186 - bioconductor-org.hs.eg.db v3.5.0 185 - bioconductor-org.hs.eg.db v3.12.0
187 - bioconductor-org.mm.eg.db v3.5.0 186 - bioconductor-org.mm.eg.db v3.12.0
188 - bioconductor-annotationdbi v1.40.0 187 - bioconductor-annotationdbi v1.52.0
189 - bioconductor-biobase v2.98.0 188 - bioconductor-biobase v2.50.0
190 - goprofiles v1.38.0 189 - bioconductor-go.db v3.12.1
190 - goprofiles v1.52.0
191 191
192 ----- 192 -----
193 193
194 .. class:: infomark 194 .. class:: infomark
195 195