Mercurial > repos > proteore > proteore_goprofiles
changeset 2:58a8ddd58dde draft
planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
| author | proteore |
|---|---|
| date | Wed, 07 Mar 2018 09:08:44 -0500 |
| parents | 1236ee08ccb8 |
| children | ed226f0e5625 |
| files | README.rst goprofiles.R goprofiles.xml |
| diffstat | 3 files changed, 9 insertions(+), 9 deletions(-) [+] |
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--- a/README.rst Fri Feb 16 03:40:36 2018 -0500 +++ b/README.rst Wed Mar 07 09:08:44 2018 -0500 @@ -1,5 +1,5 @@ -Galaxy wrappers for goProfiles package -====================================== +Galaxy wrappers for goProfiles Tool +=================================== **Authors** @@ -13,7 +13,7 @@ Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. -====================================== +----------------------------------- This tool, based on the goProfiles R package, performs statistical analysis of functional profiles. It is based on GO ontology and considers either a gene set ('Entrez’ Identifiers) or a protein set (Uniprot ID) as input.
--- a/goprofiles.R Fri Feb 16 03:40:36 2018 -0500 +++ b/goprofiles.R Wed Mar 07 09:08:44 2018 -0500 @@ -1,6 +1,6 @@ # Load necessary libraries -library("org.Hs.eg.db", quietly=TRUE) -library("goProfiles", quietly=TRUE) +library(org.Hs.eg.db) +library(goProfiles) # Read file and return file content as data.frame? readfile = function(filename, header) {
--- a/goprofiles.xml Fri Feb 16 03:40:36 2018 -0500 +++ b/goprofiles.xml Wed Mar 07 09:08:44 2018 -0500 @@ -1,11 +1,11 @@ <tool id="goProfiles" name="goProfiles" version="0.1.0"> - <description> Identify enriched biological themes, GO terms from your protein list. + <description> Statistical analysis of functional profiles </description> <requirements> <requirement type="package" version="3.4.1">R</requirement> - <requirement type="package" version="3.3.0">bioconductor-org.hs.eg.db</requirement> - <requirement type="package" version="1.38.0">bioconductor-annotationdbi</requirement> - <requirement type="package" version="2.38.0">bioconductor-biobase</requirement> + <requirement type="package" version="3.4.1">bioconductor-org.hs.eg.db</requirement> + <requirement type="package" version="1.38.2">bioconductor-annotationdbi</requirement> + <requirement type="package" version="2.36.2">bioconductor-biobase</requirement> <requirement type="package" version="1.38.0">goprofiles</requirement> </requirements> <stdio>