Mercurial > repos > proteore > proteore_prot_features

comparison protein_features.R @ 7:af7089d1c7c0 draft

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planemo upload commit 9022c185a27542381b163c6079bb2d9328e103b0-dirty
author proteore
date Wed, 21 Mar 2018 10:49:19 -0400
parents fc0118aa432a
children
comparison
equal deleted inserted replaced
6:fc0118aa432a 7:af7089d1c7c0
115 names = c(names, arg) 115 names = c(names, arg)
116 info = nextprot[match(input, nextprot["NextprotID"][,]),][arg][,] 116 info = nextprot[match(input, nextprot["NextprotID"][,]),][arg][,]
117 res = cbind(res, info) 117 res = cbind(res, info)
118 } 118 }
119 } 119 }
120 --inputtype="tabfile" --input="Galaxy50-[ID_Converter_on_data_47].tabular" --header='true' --natlas="proteinatlas.csv" --column='c7' --select='Gene,Gene.description,Evidence,RNA.tissue.category,Reliability.IH,TPM.max.in.non.specific' --output="test.txt" 120
121
122 # Write output 121 # Write output
123 if (inputtype == "copypaste") { 122 if (inputtype == "copypaste") {
124 res = cbind(as.matrix(input), res) 123 res = cbind(as.matrix(input), res)
125 names = c(typeid, names) 124 names = c(typeid, names)
126 colnames(res) = names 125 colnames(res) = names