Mercurial > repos > proteore > proteore_reactome

annotate README.rst @ 4:878128362e33 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 34edf9c3db61650a03d5a0d548b9697a94ecde34-dirty
author proteore
date Tue, 03 Apr 2018 08:24:45 -0400
parents 6c84a41c44d8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
1 Wrapper for Reactome Tool
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
2 =========================
0
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
3
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
4 Reactome web service (https://reactome.org)
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
5
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
6 **Galaxy integration**
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
7
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
8 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
9
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
10 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
11
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
13
2
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
14 -------------------------
0
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
15
2
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
16 Reactome software provides service of creating diagram representing the relations between the biological processes.
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
17 This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file.
0
216bd2a75b1d planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
proteore
parents:
diff changeset
18
2
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
19 **For the rows that have more than 1 ID, only the first one is taken into account.**
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
20
6c84a41c44d8 planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
proteore
parents: 0
diff changeset
21 **Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7). If there is any ID containing invalid characters, it will be removed from the queue and placed in "Invalid identifiers" file.**