Mercurial > repos > proteore > proteore_reactome

comparison reactome_analysis.xml @ 2:6c84a41c44d8 draft

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planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
author proteore
date Wed, 07 Mar 2018 09:32:11 -0500
parents 35cd50b8ccf2
children be06c14e543d
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1:35cd50b8ccf2 2:6c84a41c44d8
1 <tool id="reactome_analysis" name="Reactome Analysis Tools" version="0.1.0"> 1 <tool id="reactome_analysis" name="Reactome" version="0.1.0">
2 <description>query Reactome with your IDs list 2 <description>queries web service and display pathways
3 </description> 3 </description>
4 <requirements> 4 <requirements>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" /> 7 <exit_code range="1:" />
48 </test> 48 </test>
49 </tests> 49 </tests>
50 <help><![CDATA[ 50 <help><![CDATA[
51 Reactome software provides service of creating diagram representing the relations between the biological processes. This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file. 51 Reactome software provides service of creating diagram representing the relations between the biological processes. This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file.
52 52
53 **For the rows that have more than 1 ID, only the first one is taken into account** 53 **For the rows that have more than 1 ID, only the first one is taken into account.**
54 **Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7)** 54
55 **Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7). If there is any ID containing invalid characters, it will be removed from the queue and placed in "Invalid identifiers" file.**
55 56
56 ----- 57 -----
57 58
58 .. class:: infomark 59 .. class:: infomark
59 60