Mercurial > repos > proteore > proteore_reactome

comparison reactome_analysis.xml @ 7:6c95f1b88627 draft

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planemo upload commit 89cd1b5f2ca7b135abfe2d9ed18bf2478a59e099-dirty
author proteore
date Tue, 05 Mar 2019 09:40:41 -0500
parents 9cc475dcd0f2
children a58dc5d4b8cd
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6:9cc475dcd0f2 7:6c95f1b88627
1 <tool id="reactome_analysis" name="Query Reactome pathway database" version="2018.12.12"> 1 <tool id="reactome_analysis" name="Query pathway database" version="2019.03.05">
2 <description></description> 2 <description>[Reactome]</description>
3 <requirements> 3 <requirements>
4 </requirements> 4 </requirements>
5 <stdio> 5 <stdio>
6 <exit_code range="1:" /> 6 <exit_code range="1:" />
7 </stdio> 7 </stdio>
37 </param> 37 </param>
38 </when> 38 </when>
39 <when value="file" > 39 <when value="file" >
40 <param name="file" type="data" format="txt, tabular" label="Input file containing your IDs" help="Input file is a tab-delimited file with at least one contain containing identifier" /> 40 <param name="file" type="data" format="txt, tabular" label="Input file containing your IDs" help="Input file is a tab-delimited file with at least one contain containing identifier" />
41 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does file contain header?" /> 41 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does file contain header?" />
42 <param type="text" name="ncol" value="c1" label="Column number of IDs (e.g : Enter c1 for column n°1)" /> 42 <param type="text" name="ncol" value="c1" label="Column number of IDs (e.g : Enter c1 for column n°1)">
43 <validator type="regex" message="Please enter a column number, for example: 'c1' for the first column">[c]{0,1}[0-9]+</validator>
44 </param>
43 </when> 45 </when>
44 </conditional> 46 </conditional>
45 <param name="species" type="select" label="Species"> 47 <param name="species" type="select" label="Species">
46 <option value="48887">Human (Homo sapiens)</option> 48 <option value="48887">Human (Homo sapiens)</option>
47 <option value="48892">Mouse (Mouse musculus)</option> 49 <option value="48892">Mouse (Mouse musculus)</option>