Mercurial > repos > proteore > proteore_reactome

comparison reactome_analysis.xml @ 5:7fbd66f985b7 draft

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planemo upload commit b404b1f6719a07b1af9a2752ca3794b9b23d5143
author proteore
date Tue, 10 Apr 2018 04:35:05 -0400
parents 878128362e33
children 9cc475dcd0f2
comparison
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4:878128362e33 5:7fbd66f985b7
31 </mapping> 31 </mapping>
32 </sanitizer> 32 </sanitizer>
33 </param> 33 </param>
34 </when> 34 </when>
35 <when value="file" > 35 <when value="file" >
36 <param name="file" type="data" format="txt, tabular" label="Input file containing your identifiers" help="Input file is a tab-delimited file containing different information of proteins, such as an output of MaxQuant software" /> 36 <param name="file" type="data" format="txt, tabular" label="Input file containing your identifiers" help="Input file is a tab-delimited file with at least one contain containing identifier" />
37 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> 37 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" />
38 <param type="text" name="ncol" value="c1" label="Please specify the column where you would like to apply the comparison" help ='For example, fill in "c1" if you want to filter the first column' /> 38 <param type="text" name="ncol" value="c1" label="Please specify the column number where are your IDs (e.g : Enter c1 for column n°1)" />
39 </when> 39 </when>
40 40
41 </conditional> 41 </conditional>
42 </inputs> 42 </inputs>
43 <outputs> 43 <outputs>
44 <data name="output" format="html" label="" /> 44 <data name="output" format="html" label="" />
45 <data name="trash" format="tabular" hidden="true" label="Invalid id not send to reactome"> 45 <data name="trash" format="tabular" hidden="true" label="Invalid id not send to reactome">
46 <discover_datasets pattern="(Reactome_Analysis_Tools_invalid_ID).txt" ext="txt" visible="false" assign_primary_output="false"/> 46 <discover_datasets pattern="(Reactome_Analysis_Tools_invalid_ID).txt" ext="txt" visible="false" assign_primary_output="false"/>
47 </data> 47 </data>
48 </outputs> 48 </outputs>
49 <tests> 49 <tests>
50 <test> 50 <test>
51 <conditional name="opt" > 51 <conditional name="opt" >