Mercurial > repos > proteore > proteore_reactome
diff reactome_analysis.py @ 4:878128362e33 draft
planemo upload commit 34edf9c3db61650a03d5a0d548b9697a94ecde34-dirty
author | proteore |
---|---|
date | Tue, 03 Apr 2018 08:24:45 -0400 |
parents | 216bd2a75b1d |
children | 9cc475dcd0f2 |
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--- a/reactome_analysis.py Fri Mar 23 10:48:36 2018 -0400 +++ b/reactome_analysis.py Tue Apr 03 08:24:45 2018 -0400 @@ -23,8 +23,8 @@ """ Check if an variable is numeric """ - float_format = re.compile("^[\-]?[1-9][0-9]*\.?[0-9]+$") - int_format = re.compile("^[\-]?[1-9][0-9]*$") + float_format = re.compile(r"^[-]?[1-9][0-9]*.?[0-9]+$") + int_format = re.compile(r"^[-]?[1-9][0-9]*$") test = "" if format == "int": test = re.match(int_format, n) @@ -81,9 +81,11 @@ template.close() output.close() - trash_out = open(trash_file, "w") - trash_out.write("\n".join(trash)) - trash_out.close() + if trash: + print(trash) + trash_out = open(trash_file, "w") + trash_out.write("\n".join(trash)) + trash_out.close() def options(): parser = argparse.ArgumentParser()