Mercurial > repos > proteore > proteore_reactome

changeset 2:6c84a41c44d8 draft

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planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
author proteore
date Wed, 07 Mar 2018 09:32:11 -0500
parents 35cd50b8ccf2
children be06c14e543d
files README.rst reactome_analysis.xml
diffstat 2 files changed, 13 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Fri Feb 16 03:43:58 2018 -0500
+++ b/README.rst	Wed Mar 07 09:32:11 2018 -0500
@@ -1,5 +1,5 @@
-Wrapper for Reactome web service
-================================
+Wrapper for Reactome Tool
+=========================
 
 Reactome web service (https://reactome.org)
 
@@ -11,10 +11,11 @@
 
 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
 
-================================
-
-Reactome software provides service of creating diagram representing the relations between the biological processes. This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file.
+-------------------------
 
-**For the rows that have more than 1 ID, only the first one is taken into account**
+Reactome software provides service of creating diagram representing the relations between the biological processes. 
+This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file.
 
-**This tool only accepts letters (a-z or A-Z), numbers (0-9) and 3 characters "." "-" "_" for IDs. If there is ID containing other than these characters, it will be removed from the queue and placed in "Invalid identifiers" file**
+**For the rows that have more than 1 ID, only the first one is taken into account.**
+
+**Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7). If there is any ID containing invalid characters, it will be removed from the queue and placed in "Invalid identifiers" file.**
--- a/reactome_analysis.xml	Fri Feb 16 03:43:58 2018 -0500
+++ b/reactome_analysis.xml	Wed Mar 07 09:32:11 2018 -0500
@@ -1,5 +1,5 @@
-<tool id="reactome_analysis" name="Reactome Analysis Tools" version="0.1.0">
-    <description>query Reactome with your IDs list
+<tool id="reactome_analysis" name="Reactome" version="0.1.0">
+    <description>queries web service and display pathways
     </description>
     <requirements>
     </requirements>
@@ -50,8 +50,9 @@
     <help><![CDATA[
 Reactome software provides service of creating diagram representing the relations between the biological processes. This tool allows linking to Reactome web service with pre-loaded data from a list of IDs, a file containing IDs or from a column of a complexed file.
 
-**For the rows that have more than 1 ID, only the first one is taken into account**
-**Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7)**
+**For the rows that have more than 1 ID, only the first one is taken into account.**
+
+**Supported IDs: Uniprot accession number (e.g. P01023), Entrez gene ID (e.g.7157), gene name (e.g. AQP7). If there is any ID containing invalid characters, it will be removed from the queue and placed in "Invalid identifiers" file.**
 
 -----