Mercurial > repos > proteore > proteore_topgo
comparison topGO.xml @ 1:6788a57c5cb5 draft
planemo upload commit 5774fd6a5a746f36f6bf4671a51a39ea2b978300-dirty
author | proteore |
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date | Fri, 16 Feb 2018 04:15:08 -0500 |
parents | 472ad7da3d92 |
children | f62d29616966 |
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0:472ad7da3d92 | 1:6788a57c5cb5 |
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118 </outputs> | 118 </outputs> |
119 <tests> | 119 <tests> |
120 <test> | 120 <test> |
121 <conditional name="inputtype"> | 121 <conditional name="inputtype"> |
122 <param name="filetype " value="tabfile"/> | 122 <param name="filetype " value="tabfile"/> |
123 <param name="genelist" value="prot_reactome_EGFR_mapped_ensg.txt"/> | 123 <param name="genelist" value="ID_Converter_FKW_Lacombe_et_al_2017_OK.txt"/> |
124 <param name="column" value="c1"/> | 124 <param name="column" value="c8"/> |
125 <param name="header" value="FALSE"/> | 125 <param name="header" value="TRUE"/> |
126 </conditional> | 126 </conditional> |
127 <param name="ontocat" value="BP"/> | 127 <param name="ontocat" value="BP"/> |
128 <param name="option" value="elim"/> | 128 <param name="option" value="elim"/> |
129 <param name="threshold" value="1e-3"/> | 129 <param name="threshold" value="1e-3"/> |
130 <param name="correction" value="BH"/> | 130 <param name="correction" value="BH"/> |
136 </conditional> | 136 </conditional> |
137 <conditional name="conddot"> | 137 <conditional name="conddot"> |
138 <param name="dotoutput" value="TRUE"/> | 138 <param name="dotoutput" value="TRUE"/> |
139 </conditional> | 139 </conditional> |
140 <param name="geneuniverse" value="org.Hs.eg.db"/> | 140 <param name="geneuniverse" value="org.Hs.eg.db"/> |
141 <output name="outputtext" file="Text_output_for_topGO_analysis.txt"/> | 141 <output name="outputtext" file="Text_output_for_topGO_analysis_BP_category.tabular"/> |
142 <output name="outputbarplot" file="Barplot_output_for_topGO_analysis.png"/> | 142 <output name="outputbarplot" file="Barplot_output_for_topGO_analysis_BP_category.png"/> |
143 <output name="outputdotplot" file="Dotplot_output_for_topGO_analysis.png"/> | 143 <output name="outputdotplot" file="Dotplot_output_for_topGO_analysis_BP_category.png"/> |
144 </test> | 144 </test> |
145 </tests> | 145 </tests> |
146 <help><![CDATA[ | 146 <help><![CDATA[ |
147 | 147 |
148 | 148 |