Mercurial > repos > proteore > proteore_topgo
diff topGO.xml @ 8:ddaa0c318d65 draft
planemo upload commit d23909db127a655212b79d6826033889812f59b5-dirty
author | proteore |
---|---|
date | Fri, 23 Mar 2018 10:43:32 -0400 |
parents | 1b2b81169c66 |
children | 70c0c8757f5f |
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--- a/topGO.xml Thu Mar 08 11:25:05 2018 -0500 +++ b/topGO.xml Fri Mar 23 10:43:32 2018 -0400 @@ -56,11 +56,20 @@ <inputs> <conditional name="inputtype"> <param name="filetype" type="select" label="Select your type of input file" help="The identifiers must be Ensembl gene IDs (e.g : ENSG00000139618). If it is not the case, please use the ID Mapping tool."> - <option value="file_all">Input file containing your identifiers</option> + <option value="file_all" selected="true">Input file containing your identifiers</option> <option value="copy_paste">Copy/paste your list of IDs</option> </param> <when value="copy_paste"> - <param name="genelist" type="text" label="Enter a list of identifiers"/> + <param name="genelist" type="text" label="Enter a list of identifiers"> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + </valid> + <mapping initial="none"> + <add source="'" target="__sq__"/> + </mapping> + </sanitizer> + </param> </when> <when value="file_all"> <param name="genelist" type="data" format="txt,tabular" label="Choose an input file" help="This file must imperatively have 1 column filled with IDs consistent with the database that will be used. Please use the MappingIDs component if this is not the case."/> @@ -216,14 +225,25 @@ **Multiple testing corrections** Furthermore, the following corrections for multiple testing can also be applied : + - holm + - hochberg + - hommel + - bonferroni + - BH + - BY + - fdr +----- + +.. class:: infomark + **Authors** Alexa A and Rahnenfuhrer J (2016). topGO: Enrichment Analysis for Gene Ontology. R package version 2.30.0.