Mercurial > repos > proteore > proteore_venn_diagram

comparison README.rst @ 0:9d4f20618ab4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit abb24d36c776520e73220d11386252d848173697-dirty
author proteore
date Sun, 26 Nov 2017 19:09:40 -0500
parents
children 774d9cbe6937
comparison
equal deleted inserted replaced
-1:000000000000 0:9d4f20618ab4
1 Wrapper for Jvenn plug-in
2 =========================
3
4 **Authors**
5
6 Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293
7
8 **Galaxy integration**
9
10 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
11
12 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform
13
14 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
15
16 =========================
17
18 This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files.
19
20 **Inputs**
21
22 * **Query file:** A file containing different information of proteins, could be output of previous components.
23
24 * **File of a list of IDs:** .TXT format, each line contains 1 ID
25
26 AMY1A
27
28 ALB
29
30 IGKC
31
32 CSTA
33
34 IGHA1
35
36 ACTG1
37
38 * **List of IDs:** IDs separated by a space
39 AMY1A ALB IGKC CSTA IGHA1 ACTG1
40
41 If you choose a file, it is necessary to specify the column where you would like to perform the comparison.
42
43 **Outputs**
44
45 * **Summary file** (venn_diagram_summary.html):
46 Venn diagram: Could be downloaded as image (PNG, SVG)
47
48 * **Venn text output file**
49 A text file containing common/specific elements among compared lists/files.