comparison test-data/Venn_text_output.txt @ 11:958eb2ea02aa draft default tip

"planemo upload commit 00cab92333b0338cb86ff78b5bbc1b6d26621012-dirty"
author proteore
date Wed, 12 May 2021 16:48:05 +0000
parents 760470ddb9ca
children
comparison
equal deleted inserted replaced
10:e744a43171ff 11:958eb2ea02aa
1 Lacombe Bredberg Mucilli Mucilli_Bredberg Lacombe_Bredberg Lacombe_Mucilli_Bredberg Lacombe_Mucilli 1 <!DOCTYPE html>
2 P0DMV9 P04217 Q7Z794 Q13835 P02787 P02768 P08779 2 <!--
3 Q9Y6R7 P02649 P51149 P01023 P01833 P10599 P04259 3 # Copyright (C) 2015 INRA
4 P30740 Q7Z351 P17900 P59665 P01625 P07355 O75223 4 #
5 P68363 P08758 Q96KK5 Q15517 P22528 Q01469 P47756 5 # This program is free software: you can redistribute it and/or modify
6 O75635 Q9UBC9 P10809 P05109 Q9UGM3 P68871 P06733 6 # it under the terms of the GNU General Public License as published by
7 O60911 P02760 O43175 P60709 Q96DA0 P07900 P20933 7 # the Free Software Foundation, either version 3 of the License, or
8 P61160 O95436 Q6ZVX7 P62805 P02763 P15924 Q9NZH8 8 # (at your option) any later version.
9 Q15828 P02647 P01861 Q5D862 P61916 P25311 P09211 9 #
10 P23284 P15814 P14174 P07737 P01009 Q86YZ3 P04792 10 # This program is distributed in the hope that it will be useful,
11 P20930 Q9NSK0 P01593 P12273 P05089 P36952 11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
12 P01860 P01717 Q15365 Q13867 Q08188 P01040 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 Q96FX8 P04117 P37802 P01765 P04406 P60174 13 # GNU General Public License for more details.
14 P62937 Q13885 P29373 P01036 P07339 P26641 14 #
15 Q15149 P01591 P30050 P01011 P06396 P14618 15 # You should have received a copy of the GNU General Public License
16 P25705 O95613 Q6E0U4 P00338 P31944 16 # along with this program. If not, see <http://www.gnu.org/licenses/>.
17 P19971 P01880 P23526 P61626 Q8N1N4 17 -->
18 O75342 P04233 Q13748 P04083 P04075 18 <html>
19 Q92820 P01598 P05120 Q02413 P14923 19 <head>
20 P25788 P01621 Q14134 P27482 Q8WVV4 20 <title>Jvenn+</title>
21 Q9HCY8 Q9UL77 P68431 P01871 O75369 21 <meta charset="UTF-8">
22 P19012 P05362 P35527 P80188 P00558 22 <meta name="version" content="2.0.1">
23 Q8TAX7 P01024 Q5XKE5 P31947 P19013 23 <link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>
24 P42357 Q86SJ6 O15523 P31025 Q5T750 24 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>
25 P50395 P12429 P25787 Q96P63 P14735 25 <style type="text/css">
26 P01766 P43652 P22392 P63104 P47929 26 #js-alert {
27 P40121 P22897 P49189 P00738 Q06830 27 width: 90%;
28 P04080 P06313 P61978 P02788 P29508 28 margin-right: auto;
29 Q9HC84 B4E1Z4 P32119 P68371 29 margin-left: auto;
30 P59998 P01008 Q5VVQ6 Q9NZT1 30 }
31 P23396 A2IPI6 Q8IW75 P11142 31 #content {
32 P00491 P02790 P01620 P40926 32 width: 90%;
33 P62258 P61769 P02671 P01876 33 margin-right: auto;
34 P01623 P00450 P62244 P58107 34 margin-left: auto;
35 P31151 Q08380 P0CG48 P01834 35 }
36 Q6P4A8 P02751 P02675 P18206 36 .clear {
37 P63261 Q8NF17 Q9Y277 Q04695 37 clear: both;
38 P01877 Q14624 P02679 P08865 38 height: 0px;
39 P09228 P0C0L5 P02533 P13646 39 width: 100%;
40 P48637 P0C0L4 Q9Y337 P02545 40 float: none !important;
41 P07858 Q9UL83 P12035 P04040 41 }
42 P07384 P08238 P52907 P13639 42 ul.nav-tabs {
43 P06870 P02766 P35321 P05090 43 margin-bottom: 30px;
44 Q9UI42 Q9UL86 P13489 Q6KB66 44 }
45 P35579 P02774 P29401 P01857 45 #venn-filters {
46 P13473 P05155 P04264 Q6UWP8 46 padding: 10px;
47 P62987 P11686 Q14210 Q9UIV8 47 background-color: #FFF;
48 P04745 P01622 P28074 Q9C075 48 background-clip: padding-box;
49 P49720 Q6N093 P40925 O43707 49 border: 1px solid rgba(0, 0, 0, 0.15);
50 P11279 P04637 P28070 P11021 50 border-radius: 4px;
51 P18510 Q96S96 P28072 P31949 51 box-shadow: 0px 6px 12px rgba(0, 0, 0, 0.176);
52 Q14574 P62807 Q14CN4 P60842 52 margin-right: auto;
53 P02538 P23528 Q9Y3R4 53 margin-left: auto;
54 P48594 P10909 P13647 54 margin-bottom: 30px;
55 A8K2U0 A4F255 P54652 55 }
56 P09972 P00734 Q08554 56 #byFilters-jvenn {
57 O95274 P19827 P08107 57 margin-right: auto;
58 P01037 Q16378 P30041 58 margin-left: auto;
59 P0CG05 P01714 P06702 59 }
60 P00441 P11217 O43790 60 #venn-filters ul {
61 A0A0U1RVJ5 Q96QA5 61 list-style-type: none;
62 P01617 P23490 62 }
63 P01611 P22735 63 </style>
64 P04196 P13645 64
65 P01613 P17931 65 <script type="text/javascript" src="https://code.jquery.com/jquery-2.1.3.min.js"></script>
66 P02747 Q3ZCW2 66 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/highcharts.js"></script>
67 P80748 P68104 67 <script type="text/javascript" src="https://code.highcharts.com/4.1.4/modules/exporting.js"></script>
68 A0N5G5 P06576 68 <script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>
69 Q8IWL2 Q5T749 69 <script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>
70 Q9BYE4 P05091 70 <script type="text/javascript">
71 P06681 O60814 71 /***************************************************************
72 Q6MZX7 P37837 72 * Copyright notice
73 P22531 73 *
74 P03973 74 * (c) 2014 PF bioinformatique de Toulouse
75 P63167 75 * All rights reserved
76 P05783 76 *
77 P50990 77 *
78 P15880 78 * This script is an adaptation of the venny script developed by
79 P35908 79 * Juan Carlos Oliveros, BioinfoGP, CNB-CSIC:
80 P07476 80 * Oliveros, J.C. (2007) VENNY. An interactive tool for comparing
81 P49862 81 * lists with Venn Diagrams.
82 * http://bioinfogp.cnb.csic.es/tools/venny/index.html.
83 * It is distributed under the terms of the GNU General Public
84 * License as published by the Free Software Foundation; either
85 * version 2 of the License, or (at your option) any later version.
86 *
87 * The GNU General Public License can be found at
88 * http://www.gnu.org/copyleft/gpl.html.
89 *
90 * This script is distributed in the hope that it will be useful,
91 * but WITHOUT ANY WARRANTY; without even the implied warranty of
92 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
93 * GNU General Public License for more details.
94 *
95 * This copyright notice MUST APPEAR in all copies of the script!
96 ***************************************************************/
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101 <script type="text/javascript">
102 /*
103 * HTMLTable.js 0.1.0 - HTMLTable Library
104 *
105 * Copyright (c) 2015 Escudie Frederic
106 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
107 */
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109
110 /*
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112 *
113 * Copyright (c) 2015 Escudie Frederic
114 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
115 */
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118
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120 /*
121 $(document).ready(function(){
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123 series: [{
124 name: {A: 'Actors',
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126 data: {A: ["Arnold Schwarzenegger", "Jack Nicholson", "Robert de Niro", "Harrison Ford"], B: ["Freddy Mercury", "Ricky Martin", "Celine Dion"], AB: ["Marilyn Monroe", "Barbra Streisand", "Dean Martin"]},
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128 }],
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130 });
131 */
132 var jvenn_data = {"series": [{"name": {"A": "Lacombe", "B": "Bredberg", "C": "Mucilli"}, "data": {"A": ["Q15828", "P59998", "Q9HCY8", "P40121", "Q14574", "P06870", "P09972", "P48637", "Q96FX8", "O75635", "Q6P4A8", "P50395", "P19971", "P63261", "P04745", "P0CG05", "Q9UI42", "P42357", "P23396", "P25788", "O60911", "P0DMV9", "P18510", "P01623", "P68363", "Q15149", "P01860", "P30740", "P20930", "A8K2U0", "Q9HC84", "P07858", "P04080", "P35579", "P00491", "Q9Y6R7", "P01877", "P25705", "P00441", "P62937", "Q8TAX7", "P09228", "Q92820", "P61160", "P49720", "P02538", "P19012", "P23284", "P48594", "O95274", "P07384", "P13473", "P31151", "P01766", "P62258", "P62987", "O75342", "P11279", "P01037", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], "B": ["P01611", "P02774", "P01008", "P01598", "Q16378", "Q9NSK0", "P02649", "A4F255", "P04196", "Q96S96", "P22897", "P01024", "P02647", "P0C0L4", "O95436", "P80748", "P08238", "Q86SJ6", "P04233", "P06681", "P04637", "Q9UL83", "P11686", "P10909", "Q7Z351", "P23528", "Q14624", "P01880", "Q13885", "Q8IWL2", "Q8NF17", "P04217", "O95613", "P11217", "P05155", "P01621", "A2IPI6", "Q08380", "P0C0L5", "P19827", "P02747", "Q6N093", "A0A0U1RVJ5", "P01717", "B4E1Z4", "P02760", "Q9UL77", "P15814", "P00450", "Q9UL86", "P01613", "P01617", "Q9BYE4", "P08758", "P02766", "A0N5G5", "P02790", "P04117", "P61769", "P43652", "Q6MZX7", "P01714", "P00734", "P05362", "P01591", "P62807", "P12429", "P02751", "P06313", "Q9UBC9", "P01622", "", "", "", "", "", "", "", "", ""], "C": ["P68431", "P51149", "P13647", "Q3ZCW2", "P01593", "P07476", "P32119", "Q14CN4", "P01861", "P01620", "P23490", "P0CG48", "P12035", "P54652", "P10809", "Q96KK5", "P37802", "O15523", "P17931", "Q5T749", "Q6E0U4", "P06576", "P13489", "P23526", "P28070", "P28074", "P35527", "Q14134", "P30050", "P05120", "P52907", "P68104", "Q08554", "P29401", "P15880", "P49862", "P22392", "P40925", "P62244", "Q7Z794", "P22531", "Q14210", "P03973", "Q8IW75", "P08107", "O60814", "P35321", "P14174", "Q5XKE5", "P02671", "P28072", "P02675", "P29373", "O43790", "P05091", "Q5VVQ6", "Q9Y277", "O43175", "P17900", "P63167", "P49189", "Q6ZVX7", "P02679", "P04264", "Q9Y337", "P30041", "Q96QA5", "P22735", "P06702", "P25787", "Q9Y3R4", "P37837", "P02533", "P05783", "P50990", "P35908", "P61978", "Q15365", "P13645", "Q13748"], "AB": ["P02763", "P01009", "P12273", "P01833", "P02787", "Q13867", "P01036", "P61916", "P01625", "P22528", "P01765", "Q96DA0", "P01011", "Q9UGM3", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], "AC": ["P31949", "O75223", "P60842", "P14923", "P18206", "Q9NZT1", "P09211", "Q9UIV8", "P01857", "P04040", "O75369", "Q8WVV4", "P47756", "P40926", "P05090", "P60174", "Q9C075", "P20933", "P04792", "P29508", "P11142", "P01040", "Q5T750", "P14618", "P13639", "P04075", "P31944", "P14735", "Q04695", "P58107", "P19013", "P36952", "P01876", "P08779", "P08865", "P11021", "P00558", "P06733", "Q6UWP8", "Q6KB66", "P04259", "P68371", "Q9NZH8", "P26641", "P13646", "P02545", "Q8N1N4", "Q06830", "P01834", "O43707", "P47929", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], "BC": ["P07737", "P60709", "Q5D862", "Q15517", "Q13835", "P05109", "P62805", "P01023", "P59665", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], "ABC": ["Q96P63", "P80188", "P10599", "P01871", "P31025", "Q86YZ3", "P27482", "P02768", "P07355", "P63104", "P04406", "P15924", "Q08188", "P07339", "P05089", "Q01469", "P31947", "P68871", "P61626", "P06396", "P00338", "P00738", "Q02413", "P07900", "P02788", "P25311", "P04083", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""]}, "values": {"A": 59, "B": 71, "C": 80, "AB": 14, "AC": 51, "BC": 9, "ABC": 27}}], "displayStat": "true", "displaySwitch": "true", "shortNumber": "true"} ;
133 $(document).ready(function(){
134 $('#example').jvenn(jvenn_data);
135 });
136
137 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
138 //
139 // Data
140 //
141 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
142 //var processed_filters = ###PORCESSED_FILTERS### ;
143 /* Example:
144 ['filterA', 'filterB', 'filterC']
145 */
146 //var global_results = ###GLOBAL_RESULTS### ;
147 /* Example:
148 {
149 'nb_clstr_kept': 100,
150 'nb_clstr_ini': 300,
151 'nb_seq_kept': 100,
152 'nb_seq_ini': 100000
153 }
154 */
155 //var by_samples_results = ###SAMPLES_RESULTS### ;
156 /* Example:
157 {
158 'sampleA':{
159 'filtered':{
160 'filterA': 10,
161 'filterB': 20
162 },
163 'initial': 75,
164 'kept': 50
165 },
166 'sampleB':{
167 'filtered':{
168 'filterB': 20,
169 },
170 'initial': 110,
171 'kept': 90
172 }
173 }
174 */
175 //var by_filters_results = ###FILTERS_RESULTS### ;
176 /* Example:
177 [
178 {'filters':['filterA'], 'count': 10},
179 {'filters':['filterB'], 'count': 20},
180 {'filters':['filterC'], 'count': 30},
181 {'filters':['filterA', 'filterB'], 'count': 1},
182 {'filters':['filterA', 'filterC'], 'count': 2},
183 {'filters':['filterB', 'filterC'], 'count': 3},
184 {'filters':['filterA', 'filterB', 'filterC'], 'count': 4}
185 ];
186 */
187
188 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
189 //
190 // Main
191 //
192 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
193 $(function() {
194 // Remove alert
195 $('#js-alert').remove();
196 $('#content').removeClass("hidden");
197
198 // Load active tab
199 global_filters_load();
200 intersections_filters_load();
201
202 // Add tab listener
203 $('.nav-tabs a').click(function (e) {
204 e.preventDefault();
205 $(this).tab('show');
206 if( $(this).attr('href') == "#view-by-samples" && $('#view-by-samples').hasClass('disabled') ){
207 $('#view-by-samples').removeClass('disabled')
208 samples_filters_load( "filter-log" );
209 }
210 })
211 });
212 </script>
213
214 </head>
215 <body>
216 <!-- Alert -->
217 <p id="js-alert" class="alert alert-warning">
218 javascript is needed to display data.<br />
219 If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.
220 </p>
221
222 <!-- Content -->
223 <div id="example"></div>
224 </div>
225
226
227 </body>
228 </html>