Mercurial > repos > proteore > proteore_venn_diagram
diff venn_diagram.xml @ 1:760470ddb9ca draft
planemo upload commit 5774fd6a5a746f36f6bf4671a51a39ea2b978300-dirty
| author | proteore |
|---|---|
| date | Fri, 16 Feb 2018 03:37:16 -0500 |
| parents | 9d4f20618ab4 |
| children | 774d9cbe6937 |
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--- a/venn_diagram.xml Sun Nov 26 19:09:40 2017 -0500 +++ b/venn_diagram.xml Fri Feb 16 03:37:16 2018 -0500 @@ -22,7 +22,6 @@ <param type="select" name="input" label="Please provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" > <option value="list">Copy/paste your identifiers </option> <option value="file">Input file containing your identifiers</option> - </param> <when value="file"> <param type="data" name="file" format="txt,tabular" label="Choose a file that contains your list of IDs" /> @@ -54,61 +53,33 @@ <test> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="DESeq.txt" /> - <param name="header" value="false" /> + <param name="input" value="file" /> + <param name="file" value="ID_Converter_FKW_Lacombe_et_al_2017_OK.txt" /> + <param name="header" value="true" /> <param name="ncol" value="c1" /> - <param name="name" value="DESeq" /> - </conditional> - </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="FQ.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="FQ" /> - </conditional> - </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="RPKM.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="RPKM" /> + <param name="name" value="Lacombe" /> </conditional> </repeat> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="TC.txt" /> + <param name="input" value="file" /> + <param name="file" value="Mucilli.txt" /> <param name="header" value="false" /> <param name="ncol" value="c1" /> - <param name="name" value="TC" /> + <param name="name" value="Mucilli" /> </conditional> </repeat> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="TMM.txt" /> + <param name="input" value="file" /> + <param name="file" value="Bredberg.txt" /> <param name="header" value="false" /> <param name="ncol" value="c1" /> - <param name="name" value="TMM" /> + <param name="name" value="Bredberg" /> </conditional> </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="UQ.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="UQ" /> - </conditional> - </repeat> - <output name="output_summary" file="venn_diagram_summary.html" /> - <output name="output_text" file="venn_diagram_text_output.txt" /> - + <output name="output_summary" file="Venn_diagram_html.html" /> + <output name="output_text" file="Venn_text_output.txt" /> </test> </tests> <help> @@ -120,21 +91,22 @@ * **Query file:** A file containing different information of proteins, could be output of previous components. * **File of a list of IDs:** .TXT format, each line contains 1 ID - - AMY1A - - ALB - - IGKC - - CSTA - - IGHA1 - - ACTG1 + + AMY1A + + ALB + + IGKC + + CSTA + + IGHA1 + + ACTG1 * **List of IDs:** IDs separated by a space - AMY1A ALB IGKC CSTA IGHA1 ACTG1 + + AMY1A ALB IGKC CSTA IGHA1 ACTG1 If you choose a file, it is necessary to specify the column where you would like to perform the comparison.