Mercurial > repos > proteore > proteore_venn_diagram
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author | proteore |
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date | Sun, 26 Nov 2017 19:09:40 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Sun Nov 26 19:09:40 2017 -0500 @@ -0,0 +1,49 @@ +Wrapper for Jvenn plug-in +========================= + +**Authors** + +Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293 + +**Galaxy integration** + +T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR + +Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform + +Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. + +========================= + +This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files. + +**Inputs** + +* **Query file:** A file containing different information of proteins, could be output of previous components. + +* **File of a list of IDs:** .TXT format, each line contains 1 ID + + AMY1A + + ALB + + IGKC + + CSTA + + IGHA1 + + ACTG1 + +* **List of IDs:** IDs separated by a space + AMY1A ALB IGKC CSTA IGHA1 ACTG1 + +If you choose a file, it is necessary to specify the column where you would like to perform the comparison. + +**Outputs** + +* **Summary file** (venn_diagram_summary.html): + Venn diagram: Could be downloaded as image (PNG, SVG) + +* **Venn text output file** + A text file containing common/specific elements among compared lists/files.