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author | proteore |
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date | Sun, 26 Nov 2017 19:09:40 -0500 |
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Wrapper for Jvenn plug-in ========================= **Authors** Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293 **Galaxy integration** T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. ========================= This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files. **Inputs** * **Query file:** A file containing different information of proteins, could be output of previous components. * **File of a list of IDs:** .TXT format, each line contains 1 ID AMY1A ALB IGKC CSTA IGHA1 ACTG1 * **List of IDs:** IDs separated by a space AMY1A ALB IGKC CSTA IGHA1 ACTG1 If you choose a file, it is necessary to specify the column where you would like to perform the comparison. **Outputs** * **Summary file** (venn_diagram_summary.html): Venn diagram: Could be downloaded as image (PNG, SVG) * **Venn text output file** A text file containing common/specific elements among compared lists/files.