,,,,44,45,46,47,48,50,51,53,54,57,59,62,63,67,75,78,80,81,82,83,86,87,88,91,92,94,96,102,103,109,117,121,122,124,126,128,129,130,131,132,133,135,137,138,140,142,143,144,145,146,150,152,155,156,157,158,159,160,163,164,165,167,168,170,171,172,173,174,175,176,177,179,182,186,187,188,189,190,192,193,194,196,197,198,201,203,207,208,209,212,213,214,215,216,217,218,219,226,227,228,229,230,238,240,242,244,246,247,248,260,261,262,265,273,275,276,278,279,280,294,297,299,300,304,305,307,308,309,310,311,312
Clade_3C.2a_A/Hong_Kong/4801/2014_X-263B_EGG,,,,Q,N,S,S,I,E,I,D,S,Q,L,E,N,I,Q,G,Q,N,K,K,L,F,V,S,K,Y,S,V,P,R,T,N,N,S,N,T,G,V,T,Q,N,T,S,A,I,R,S,S,S,S,R,N,T,H,L,N,Y,K,A,L,N,T,M,N,N,E,Q,F,D,K,L,I,V,G,T,D,K,D,I,F,P,A,Q,S,R,X,K,R,S,A,V,I,P,N,I,G,S,I,P,S,R,I,K,G,I,L,N,S,T,I,R,S,S,P,G,K,K,S,E,F,V,R,I,A,C,R,Y,V,K,H,S
Sequence Name,N,Clade,Extra Substitutions,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Number of Amino Acid Substitutions in Antigenic Sites,% Identity of Antigenic Site Residues
A-BC-324-2017,1,3C.2a1_+_N121K_+_K92R_+_H311Q, ,.,.,.,.,M,.,.,.,.,.,.,G,.,.,.,.,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,K,.,.,.,.,.,.,.,.,.,K,.,.,.,G,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,12,0.9083969465648855,
A-BC-024-2018,1,3C.2a1_+_N121K_+_T135K, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,D,.,.,.,.,.,.,.,.,.,H,N,.,.,.,.,K,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,I,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,10,0.9236641221374046,
A-BC-325-2017,1,3C.2a_+_N121K_+_S144K, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,K,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,K,.,.,K,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,9,0.9312977099236641,
A-BC-330-2017,1,No_Match, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,K,.,R,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,8,0.9389312977099237,
A-AB-308-2017,2,3C.2a1_+_N121K_+_T135K, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,D,.,.,.,.,.,.,.,.,.,H,N,.,.,.,.,K,D,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,I,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,11,0.916030534351145,
A-AB-319-2017,2,3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H, ,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,G,.,R,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,T,.,L,.,H,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,11,0.916030534351145,
A-AB-400-2017,2,3C.2a_+_T131K_+_R142K_+_R261Q, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,8,0.9389312977099237,
A-AB-415-2017,1,3C.2a_+_T131K_+_R142K_+_R261Q, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,F,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,9,0.9312977099236641,
A-ON-003-2018,2,3C.2a_+_N121K_+_S144K, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,K,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,K,.,.,K,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,9,0.9312977099236641,
A-ON-314-2017,1,3C.3a, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,N,.,.,.,.,.,.,.,.,A,.,.,.,.,.,.,.,S,.,G,.,K,.,.,.,.,.,.,.,.,S,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,S,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,11,0.916030534351145,
A-ON-309-2017,1,No_Match, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,K,T,.,I,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,8,0.9389312977099237,
A-QC-315-2017,1,3C.2a1_+_N121K_+_K92R_+_H311Q, ,.,.,.,.,.,.,.,.,.,.,.,G,.,.,.,.,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,K,.,.,.,A,.,.,.,.,.,K,.,.,.,G,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,12,0.9083969465648855,
A-QC-309-2017,1,3C.2a1_+_N121K_+_K92R_+_H311Q, ,.,.,.,.,.,.,.,.,.,.,.,G,.,.,.,D,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,K,D,.,.,.,.,.,.,.,.,K,.,.,.,G,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,13,0.9007633587786259,
A-QC-303-2017,1,3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H, ,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,N,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,G,.,R,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,.,.,T,.,L,.,H,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,11,0.916030534351145,
A-QC-316-2017,1,3C.2a_+_T131K_+_R142K_+_R261Q, ,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,R,.,N,.,.,.,.,.,.,.,.,.,.,.,K,.,.,.,.,.,.,K,.,.,.,.,.,.,.,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,L,.,.,.,.,T,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,Q,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,.,8,0.9389312977099237,