Mercurial > repos > public-health-bioinformatics > amino2consensus
comparison test-data/HCV294-consensus.fasta @ 0:1e0389317446 draft
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/micall-lite commit 9c3ab5825c19a7c400a46f727975edb480a91c09"
| author | public-health-bioinformatics |
|---|---|
| date | Mon, 06 Jan 2020 19:11:48 -0500 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:1e0389317446 |
|---|---|
| 1 >HCV3-S52-Core | |
| 2 MSTLPKPQRQTQRNTPRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERRQPIPKARPREGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLGKVIDTLTCGFADLMGYIPLIGAPVGGVARALAHGVRALEDGVNYATGNLPGCSFSIFLLALFSCLTCPASA# | |
| 3 >HCV3-S52-E1 | |
| 4 RNASGLYMLTNDCSNGSIVYEADEVILHLPGCVPCVAD#I#TSCWTPVSPTIAVKRPGVTTASIRSHVDMLVGAATLCSALYVGDLCGAVFLVGQAFTFRPRRHITVQTCNCSIYPGHVSGHRMAWDMMMNWSPAVGLVISHLMRLPQTFFDLIAGAHWGVMAGLAYFSMQGNWAKVCIVLVMFSGVDA# | |
| 5 >HCV3-S52-E2 | |
| 6 ############################QLVNSNGSWHINSTALNCRDSLNTGFIAGLIYYTKFNSTGCPERMSRCKSIADFNQGWGPLTDANISGPSEDRPYCWHYPPRPCSTVNASKVCGPVYCFTPSPVVVGTTDAKGLPTYSFGANESDVFLLTSLRPPPGRWFGCVWMNSTGFVKTCGAPPCNIYGGTGGTDNKT#LTCPTDCFRKHPAATYARCGSGPWLTPRCLVDYPYRLWHFPCTLNFSIFKVRMFVGGVEHRFSAACNWTRGERCSLEDRDRSEQQPLLHSTTDSLILPCSFTPMPALSTGLIHLHQNIVDVQYLYGVGSGMVGWVLKWELVVLVFLLLADARVCVALWMMLLISQAEA# | |
| 7 >HCV3-S52-NS2 | |
| 8 WTGEDDATIGAGVLLLFGFFTLSPWYKHWISRLIWWNQYAICRSEAALQVWVPPLLVRGGRDSVILLTSLLYPSLIFDITKLLIAVLGPLYLIQVALTSTPYFVRAHVLIRICMLVRSAMGGKYVQMAVLTVGRWFNTYLYDHLSPMQDWAAEGLKELAVATEPVIFSPMETKVITWGADTAACGDILCGLPVSARLGHEVLLGPADDYKTMGWRLL# | |
| 9 >HCV3-S52-NS3 | |
| 10 SPISAYAQQTRGLLGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTVGGVMWTVYHGAGSRTLASNKRPALQMYTNVDQDLVGWPAPAGTKSLDPCTCGASDLYLVTREADVLPARRRGDSTASLLSPRPLSCLKGSSGGPVMCPSGHVVGIFRAAVCTRGVAKALQFIPVEALSTQVRSPSFSDNSTPPAVPEAYQVGYLHAPTGSGKSTKVPAAYVAQGYSVLVLNPSVAATLGFGMYMSKAYGIDPNIRTGTRTITTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSILGIGTVLDQAETAGVRLTVLATATPPGSITVPHPNIEEVALTNDGEIPFYGKAIPLATIKGGRHLIFCHSKKKCDELATKLRGMGVNAVAFYRGLDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDSNVAVEQYVDFSLDPTFSIETHTIPQDAVARSQRRGRTGRGRPGIYRFVTPGERPSGMFDSAVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDFWESVFTGLTHIDAHFLSQAKQQGLNFAYLVAYQATVCARAKANPPSWDEMWKCLIRLKPTLQGPTPLLYRLGAIQNDICTTHPITKYIMACMSADLEVTT# | |
| 11 >HCV3-S52-NS4a | |
| 12 SAWVLVGGVLAALAAYCLSVGCVVIIGHIELGGKPALVPDREVLYQQYDEMEEC# | |
| 13 >HCV3-S52-NS4b | |
| 14 SQSAPYIEQAQAIAQQFKDKVLGLLQRASQQEAEIRPIVQSHWQKVEAFWQKHMWNFVSGIQYLAGLSTLPGNPAVASLMAFTASVTSPLTTNQTMFFNILGGWVATHLAGPAASSAFVVSGLAGAAVGGIGIGRVLLDVLAGYGAGVSGALVAFKIMGGELPTTEDMVNLLPAILSPGALVVGVICAAVLRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAAKVTALLSSLTVTRLLRRLHQWITEDYPSPC# | |
| 15 >HCV3-S52-NS5a | |
| 16 NGDWLHDIWDWVCTVLSDFKTWLSAKIMPKMPGIPFFSCQKGYKGVWRGDGVMTTRCPCGKDLTGHVKNGSMRIAGSGLCANVWHGTFPINEYTTGPGTPVPAYNYSRALWRVTSDSYVEVRRIGDAHFVVGATNDGLKIPCQVPAPEFFTELDGVRLHRYAPPCKPLLRDEITFSVGLHSYAVGSQLPCEPEPDVAVLTSMLRDPAHITAATAARRLARGSPPSEASSSASQLSAASLKATCHTHGLYPDAELIDANLLWRQEMGSTITRVESETKVVILDSFEPLRADEDDSELSVPAECFKKPPKYPPALPIWARPDYNPPLLPPWKDPTYEPPVVHGCALPPTRPTPVPPPRRKRTIKLDGSNVSAALLALAERSFPSTKPEGTGTSSSEFGTDTTAESNDPLEADGGSDVESHSSMPPLEGEPGDPDLDADSWSTVSDSEEQSVVCC# | |
| 17 >HCV3-S52-NS5b | |
| 18 SMSYSWTGAIITPCSAEEEKLPISPLSNSLLRHHNLVYSTSSRSAAARQKKVTFDRLQVLDDHYKNVLKEVKERASGVKGRLLSFEEACSLVPPHSARSKYGYSAKDVRSLSSKAINQIRSVWEDLLEDNTTPISTTIMAKNEVFSVNPAKGGRKPARLIVYPDLGVRVCEKRALYDVIQKLSIATMGSAYGFQYSPKQRVEHLLRMWTSKKTPLGFSYDTRCFDSTVTEHDIRMEEEIYQCCDLEPEARKAINALTERLYIGGPLYNSKGLQCGYRRCRASGVLPTSFGNTITCYIKATAASRAAGLKNPSFLVCGDDLVVIAESCGVEEDRAALRAFTEAMTRYSAPPGDAPQPIYDLELISSCSSNVSVAHDGAGKRYYYLTRDPETPLARAAWETARHTPVNSWLGNIIMFAPTIWVRMVFMTHFFSILQAQEQLEKALDFEMYGATYSVTPLDLPAIIERLHGLSAFSLHSYSPTELNRVAGALRKLGIPPLRAWRHRARAVRAKLIAQGGKARICGLYLFNWAVRTKTKLTPLPAASRLDLSSWFTVGVGGNDIYHSVSHARTRHLLLCLLLLTVGVGIFLLPAR# | |
| 19 >HCV3-S52-p7 | |
| 20 AMENLVMLNALSAAGEQGFIWYLVVFCAAWHIRGRLVPLVTYGLTGLWPLALLVLLLPHRAYA# |