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view test-data/HCV294-consensus.fasta @ 1:88a2b4d2c066 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/micall-lite commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
author public-health-bioinformatics
date Wed, 08 Jan 2020 19:36:19 -0500
parents 1e0389317446
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>HCV3-S52-Core
MSTLPKPQRQTQRNTPRRPQNVKFPGGGQIVGGVYVLPRRGPRLGVRAVRKTSERSQPRERRQPIPKARPREGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLGKVIDTLTCGFADLMGYIPLIGAPVGGVARALAHGVRALEDGVNYATGNLPGCSFSIFLLALFSCLTCPASA#
>HCV3-S52-E1
RNASGLYMLTNDCSNGSIVYEADEVILHLPGCVPCVAD#I#TSCWTPVSPTIAVKRPGVTTASIRSHVDMLVGAATLCSALYVGDLCGAVFLVGQAFTFRPRRHITVQTCNCSIYPGHVSGHRMAWDMMMNWSPAVGLVISHLMRLPQTFFDLIAGAHWGVMAGLAYFSMQGNWAKVCIVLVMFSGVDA#
>HCV3-S52-E2
############################QLVNSNGSWHINSTALNCRDSLNTGFIAGLIYYTKFNSTGCPERMSRCKSIADFNQGWGPLTDANISGPSEDRPYCWHYPPRPCSTVNASKVCGPVYCFTPSPVVVGTTDAKGLPTYSFGANESDVFLLTSLRPPPGRWFGCVWMNSTGFVKTCGAPPCNIYGGTGGTDNKT#LTCPTDCFRKHPAATYARCGSGPWLTPRCLVDYPYRLWHFPCTLNFSIFKVRMFVGGVEHRFSAACNWTRGERCSLEDRDRSEQQPLLHSTTDSLILPCSFTPMPALSTGLIHLHQNIVDVQYLYGVGSGMVGWVLKWELVVLVFLLLADARVCVALWMMLLISQAEA#
>HCV3-S52-NS2
WTGEDDATIGAGVLLLFGFFTLSPWYKHWISRLIWWNQYAICRSEAALQVWVPPLLVRGGRDSVILLTSLLYPSLIFDITKLLIAVLGPLYLIQVALTSTPYFVRAHVLIRICMLVRSAMGGKYVQMAVLTVGRWFNTYLYDHLSPMQDWAAEGLKELAVATEPVIFSPMETKVITWGADTAACGDILCGLPVSARLGHEVLLGPADDYKTMGWRLL#
>HCV3-S52-NS3
SPISAYAQQTRGLLGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTVGGVMWTVYHGAGSRTLASNKRPALQMYTNVDQDLVGWPAPAGTKSLDPCTCGASDLYLVTREADVLPARRRGDSTASLLSPRPLSCLKGSSGGPVMCPSGHVVGIFRAAVCTRGVAKALQFIPVEALSTQVRSPSFSDNSTPPAVPEAYQVGYLHAPTGSGKSTKVPAAYVAQGYSVLVLNPSVAATLGFGMYMSKAYGIDPNIRTGTRTITTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSILGIGTVLDQAETAGVRLTVLATATPPGSITVPHPNIEEVALTNDGEIPFYGKAIPLATIKGGRHLIFCHSKKKCDELATKLRGMGVNAVAFYRGLDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDSNVAVEQYVDFSLDPTFSIETHTIPQDAVARSQRRGRTGRGRPGIYRFVTPGERPSGMFDSAVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDFWESVFTGLTHIDAHFLSQAKQQGLNFAYLVAYQATVCARAKANPPSWDEMWKCLIRLKPTLQGPTPLLYRLGAIQNDICTTHPITKYIMACMSADLEVTT#
>HCV3-S52-NS4a
SAWVLVGGVLAALAAYCLSVGCVVIIGHIELGGKPALVPDREVLYQQYDEMEEC#
>HCV3-S52-NS4b
SQSAPYIEQAQAIAQQFKDKVLGLLQRASQQEAEIRPIVQSHWQKVEAFWQKHMWNFVSGIQYLAGLSTLPGNPAVASLMAFTASVTSPLTTNQTMFFNILGGWVATHLAGPAASSAFVVSGLAGAAVGGIGIGRVLLDVLAGYGAGVSGALVAFKIMGGELPTTEDMVNLLPAILSPGALVVGVICAAVLRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAAKVTALLSSLTVTRLLRRLHQWITEDYPSPC#
>HCV3-S52-NS5a
NGDWLHDIWDWVCTVLSDFKTWLSAKIMPKMPGIPFFSCQKGYKGVWRGDGVMTTRCPCGKDLTGHVKNGSMRIAGSGLCANVWHGTFPINEYTTGPGTPVPAYNYSRALWRVTSDSYVEVRRIGDAHFVVGATNDGLKIPCQVPAPEFFTELDGVRLHRYAPPCKPLLRDEITFSVGLHSYAVGSQLPCEPEPDVAVLTSMLRDPAHITAATAARRLARGSPPSEASSSASQLSAASLKATCHTHGLYPDAELIDANLLWRQEMGSTITRVESETKVVILDSFEPLRADEDDSELSVPAECFKKPPKYPPALPIWARPDYNPPLLPPWKDPTYEPPVVHGCALPPTRPTPVPPPRRKRTIKLDGSNVSAALLALAERSFPSTKPEGTGTSSSEFGTDTTAESNDPLEADGGSDVESHSSMPPLEGEPGDPDLDADSWSTVSDSEEQSVVCC#
>HCV3-S52-NS5b
SMSYSWTGAIITPCSAEEEKLPISPLSNSLLRHHNLVYSTSSRSAAARQKKVTFDRLQVLDDHYKNVLKEVKERASGVKGRLLSFEEACSLVPPHSARSKYGYSAKDVRSLSSKAINQIRSVWEDLLEDNTTPISTTIMAKNEVFSVNPAKGGRKPARLIVYPDLGVRVCEKRALYDVIQKLSIATMGSAYGFQYSPKQRVEHLLRMWTSKKTPLGFSYDTRCFDSTVTEHDIRMEEEIYQCCDLEPEARKAINALTERLYIGGPLYNSKGLQCGYRRCRASGVLPTSFGNTITCYIKATAASRAAGLKNPSFLVCGDDLVVIAESCGVEEDRAALRAFTEAMTRYSAPPGDAPQPIYDLELISSCSSNVSVAHDGAGKRYYYLTRDPETPLARAAWETARHTPVNSWLGNIIMFAPTIWVRMVFMTHFFSILQAQEQLEKALDFEMYGATYSVTPLDLPAIIERLHGLSAFSLHSYSPTELNRVAGALRKLGIPPLRAWRHRARAVRAKLIAQGGKARICGLYLFNWAVRTKTKLTPLPAASRLDLSSWFTVGVGGNDIYHSVSHARTRHLLLCLLLLTVGVGIFLLPAR#
>HCV3-S52-p7
AMENLVMLNALSAAGEQGFIWYLVVFCAAWHIRGRLVPLVTYGLTGLWPLALLVLLLPHRAYA#