Mercurial > repos > public-health-bioinformatics > assign_clades
comparison assign_clades.xml @ 0:a971083404a4 draft default tip
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit b96b6e06f6eaa6ae8ef4c24630dbb72a4aed7dbe
| author | public-health-bioinformatics |
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| date | Thu, 04 Jul 2019 19:34:32 -0400 |
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| -1:000000000000 | 0:a971083404a4 |
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| 1 <tool id="assign_clades" name="Assign Clades" version="0.0.1"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="1.70">biopython</requirement> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 python $__tool_directory__/assign_clades.py | |
| 7 '$input_fasta' | |
| 8 '$clade_definitions' | |
| 9 '$output_file' | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param name="input_fasta" format="fasta" type="data" /> | |
| 13 <param name="clade_definitions" format="csv" type="data" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output_file" format="fasta"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input_fasta" value="input_fasta.fasta" /> | |
| 21 <param name="clade_definitions" value="clades.csv" /> | |
| 22 <output name="output_file" value="output.fasta" /> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help><![CDATA[ | |
| 26 ]]></help> | |
| 27 <citations> | |
| 28 </citations> | |
| 29 </tool> |