Mercurial > repos > public-health-bioinformatics > assign_clades
diff assign_clades.xml @ 0:a971083404a4 draft default tip
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit b96b6e06f6eaa6ae8ef4c24630dbb72a4aed7dbe
author | public-health-bioinformatics |
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date | Thu, 04 Jul 2019 19:34:32 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/assign_clades.xml Thu Jul 04 19:34:32 2019 -0400 @@ -0,0 +1,29 @@ +<tool id="assign_clades" name="Assign Clades" version="0.0.1"> + <requirements> + <requirement type="package" version="1.70">biopython</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + python $__tool_directory__/assign_clades.py + '$input_fasta' + '$clade_definitions' + '$output_file' + ]]></command> + <inputs> + <param name="input_fasta" format="fasta" type="data" /> + <param name="clade_definitions" format="csv" type="data" /> + </inputs> + <outputs> + <data name="output_file" format="fasta"/> + </outputs> + <tests> + <test> + <param name="input_fasta" value="input_fasta.fasta" /> + <param name="clade_definitions" value="clades.csv" /> + <output name="output_file" value="output.fasta" /> + </test> + </tests> + <help><![CDATA[ + ]]></help> + <citations> + </citations> +</tool>