Mercurial > repos > public-health-bioinformatics > assign_clades

diff assign_clades.xml @ 0:a971083404a4 draft default tip

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planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit b96b6e06f6eaa6ae8ef4c24630dbb72a4aed7dbe
author public-health-bioinformatics
date Thu, 04 Jul 2019 19:34:32 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/assign_clades.xml	Thu Jul 04 19:34:32 2019 -0400
@@ -0,0 +1,29 @@
+<tool id="assign_clades" name="Assign Clades" version="0.0.1">
+  <requirements>
+    <requirement type="package" version="1.70">biopython</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    python $__tool_directory__/assign_clades.py
+    '$input_fasta'
+    '$clade_definitions'
+    '$output_file'
+  ]]></command>
+  <inputs>
+    <param name="input_fasta" format="fasta" type="data" />
+    <param name="clade_definitions" format="csv" type="data" />
+  </inputs>
+  <outputs>
+    <data name="output_file" format="fasta"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input_fasta" value="input_fasta.fasta" />
+      <param name="clade_definitions" value="clades.csv" />
+      <output name="output_file" value="output.fasta" />
+    </test>
+  </tests>
+  <help><![CDATA[
+  ]]></help>
+  <citations>
+  </citations>
+</tool>