Mercurial > repos > public-health-bioinformatics > blast_report_basic
diff templates/template1.tmpl @ 0:a61ee7b075c0 draft default tip
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/blast_report_basic commit b9c92df78fd78bf5881ab0cc5f5692d2bc71f5f6"
| author | public-health-bioinformatics |
|---|---|
| date | Tue, 03 Mar 2020 06:11:45 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/templates/template1.tmpl Tue Mar 03 06:11:45 2020 -0500 @@ -0,0 +1,108 @@ +#silent import time +#set $display_m = 20 +#set $header = '<tr class="header"><th>Accession</th><th>Description</th><th>Score</th><th>% Coverage</th><th>% Identity</th></tr>' +<html> + <head> + <style> + body { + font-size:0.75em; + } + table, tr { + width: 100%; + } + table { + border-collapse: collapse; + border: 1px solid black; + } + tr.header { + background-color: lightgrey; + } + th { + border: 1px solid black; + } + td { + border-left: 1px solid black; + border-right: 1px solid black; + border-bottom: 1px dashed grey; + } + td.descr { + font-size: 80%; + } + h3 { + page-break-before: always; + color: blue; + } + h3.first { + page-break-before: avoid; + } + span.super { + color: navy; + font-size: 75%; + vertical-align: top; + } + </style> + <script> + function toggle(id){ + var element = document.getElementById(id) + console.log(id) + if (element.style.display == 'none') { + //console.log(element.tagName); + if (element.tagName == 'TBODY') element.style.display = 'table-row-group'; + else if (element.tagName == 'TD') element.style.display = 'table-cell'; + else element.style.display = 'block'; + } else { + element.style.display = 'none'; + } + } + </script> + </head> + <body> + #set $q = 0 + #for $query in $queries + #set $bin_symbols = dict([($bin,$i) for $i, $bin in enumerate($query.bins, 1)]) + #set $m = 0 + <h3 id="${query.query_id}" #if $q == 0 then'class="first"' else '' #>$query.query_id</h3> + <br/> + <table id="${query.query_id}_matches"> + #if len($query.matches) == 0: + <tr class="header"><th colspan="5">No matches to report</th></tr> + </table> + #else: + $header + #for $match in $query.matches: + #if $m == $display_m + <tbody id="${query.query_id}_extra" style="display:none"> + #end if + <tr> + <td>$match.subject_acc <span class="super">#echo ', '.join(sorted([str($bin_symbols[$bin]) for $bin in $match.bins]))#</span></td> + <td class="descr">$match.subject_descr</td> + <td>$match.score</td> + <td>$match.p_cov</td> + <td>$match.p_ident</td> + </tr> + #set $m += 1 + #end for + #if $m >= $display_m + </tbody> + <td id="${query.query_id}_show" align="center" colspan="6" >Displaying ${display_m}/$m matches. <a href="#${query.query_id}_extra" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Show the remaining results.</a></td> + <td id="${query.query_id}_hide" align="center" colspan="6" style="display:none"><a href="#${query.query_id}" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Hide the last #echo $m - $display_m # results.</a></td> + <tr> + </tr> + #end if + </table> + #if len($bin_symbols) > 0: + <p>#echo ', '.join(['<span class="super">%s</span> %s'%($bin_symbols[$bin],$bin) for $bin in $query.bins])#</p> + #end if + #end if + #if $query.pident_filtered > 0: + <p>$query.pident_filtered results filtered by % Identity.</p> + #end if + #if $query.kw_filtered > 0: + <p>$query.kw_filtered results filtered by description keywords: #echo ', '.join(list(["%s matches to '%s'" % (str($query.kw_filtered_breakdown[$kw]),$kw) for $kw in $query.kw_filtered_breakdown])) #.</p> + #end if + <p>Report produced on #echo time.strftime("%d/%m/%Y") #.</p> + <hr noshade size="1" color="blue"> + #set $q += 1 + #end for + </body> +</html>