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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
author public-health-bioinformatics
date Tue, 12 Nov 2019 22:47:36 -0500
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LOCUS       JQ739157                6544 bp    DNA     circular BCT 26-JUL-2016
DEFINITION  Acinetobacter pittii strain ABCA95 plasmid pABCA95, complete
            sequence.
ACCESSION   JQ739157
VERSION     JQ739157.2
KEYWORDS    .
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 6544)
  AUTHORS   Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
  TITLE     Epidemiological characteristics and genetic structure of blaNDM-1
            in non-baumannii Acinetobacter spp. in China
  JOURNAL   J. Antimicrob. Chemother. 67 (9), 2114-2122 (2012)
   PUBMED   22604448
REFERENCE   2  (bases 1 to 6544)
  AUTHORS   Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2012) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, Affiliated with School of Medicine, Zhejiang
            University, 3 East Qingchun Road, Hangzhou, Zhejiang 310016, China
REFERENCE   3  (bases 1 to 6544)
  AUTHORS   Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2014) Department of Infectious Diseases, Sir Run
            Run Shaw Hospital, Affiliated with School of Medicine, Zhejiang
            University, 3 East Qingchun Road, Hangzhou, Zhejiang 310016, China
  REMARK    Sequence update by submitter
COMMENT     On May 12, 2014 this sequence version replaced JQ739157.1.
FEATURES             Location/Qualifiers
     source          1..6544
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="ABCA95"
                     /db_xref="taxon:48296"
                     /plasmid="pABCA95"
     gene            375..1031
                     /gene="aphA6"
     misc_feature    375..1031
                     /gene="aphA6"
                     /note="similar to aphA6; aminoglycoside
                     3'-phosphotransferase; 5' end of gene is missing"
     mobile_element  1129..2215
                     /mobile_element_type="insertion sequence:ISAba125"
     repeat_region   1138..1154
                     /note="IRL"
                     /rpt_type=inverted
     CDS             1186..2211
                     /codon_start=1
                     /transl_table=11
                     /product="Transposase"
                     /protein_id="AFK73837.1"
                     /translation="MEYIKLSYHHLNFEDRTALMLESRKEGFSARKFAELIKRHPSTI
                     YRELKRNSINDVYQARYASDNTFARRRRGHRKLKIDSILWKFIVEAIRCLWSPQQIAK
                     RLKTFPDLDQTMNVSHTTIYSTIRALPKGELKKDLLSCLRHENKKRKANGEPKKDSIL
                     QDIKTIHERPAEVQERKIPGHWEADLIKGKDNKSSIATLIERNTRLCILATLPDAKAE
                     SVRKALTEALKYLPAELRKTLTYDRGREMSEHKILEEDLGIDVYFCDPHSPWQKGTCE
                     NMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALDWLTPLEKFAQLVDYHMAF
                     ETVAPHV"
     repeat_region   2190..2206
                     /note="IRL"
                     /rpt_type=inverted
     gene            2312..3124
                     /gene="blaNDM-1"
     CDS             2312..3124
                     /gene="blaNDM-1"
                     /codon_start=1
                     /transl_table=11
                     /product="metallo-beta-lactamase"
                     /protein_id="AFK73838.1"
                     /translation="MELPNIMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQ
                     RFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQIL
                     NWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHS
                     LTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSL
                     GNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR"
     gene            3128..3493
                     /gene="bleo"
     CDS             3128..3493
                     /gene="bleo"
                     /note="involved in resistance to bleomycin"
                     /codon_start=1
                     /transl_table=11
                     /product="bleomycin resistance protein"
                     /protein_id="AFK73839.1"
                     /translation="MADHVTPNLPSRDFDVTEAFYAKLGFATSWKDRGWMILQRGGLQ
                     LEFFPYPDLDPATSSFGCCLRLDDLDAMVALVNAAGAEEKSTGWPRFKAPQLEASGLR
                     IGYLIDPDCTLVRLIQNPD"
     gene            3498..4133
                     /gene="trpF"
     misc_feature    3498..4133
                     /gene="trpF"
                     /note="similar to TrpF; phosphoribosyl anthranilate
                     isomerase; 3' end not present"
     gene            complement(4150..4830)
                     /gene="tat"
     misc_feature    complement(4150..4830)
                     /gene="tat"
                     /note="similar to TAT; twin-arginine translocation pathway
                     signal sequence protein; 5' end of gene is missing."
ORIGIN      
        1 aagcttatag cagtgtcaca gatgcgaaaa agcaattaag tgcatatttt gagttttata
       61 atttgaaacg acctcattcg agtctagaca aaatgacacc aaatgagttt tactatgatc
      121 agctacccca acaaaacaag gtggcttaac tagagcggaa tatcacttat aaatacgctt
      181 ttagttgttc aaacaagtgg gaccacctct ctcgcatttg cggggttttt aatgctgaat
      241 aaaaggaaaa cttgatggaa ttgcccaata ttattcaaca atttattgga aacagcgttt
      301 tagagccaaa taaaattggt cagtcgccat cggatgttta ttcttttaat cgaaataatg
      361 aaactttttt tcttaagcga tctagcactt tatatacaga gaccacatac agtgtctctc
      421 gcgaagcgaa aatgttgagt tggctctctg agaaattaaa ggtgcctgaa ctcatcatga
      481 cttttcagga tgagcagttt gaattaatga tcactaaagc gatcaatgca aaaccaattt
      541 cagcgctttt tttaacagac caagaattgc ttgctatcta taaggaggca ctcaatctgt
      601 taaattcagt tgctattatt gattgtccat ttatttcaaa cattgatcat cggttaaaag
      661 agtcaaaatt ttttattgat aaccaactcc ttgacgatat agatcaagat gattttgacg
      721 ctgaattatg gggagaccat agaacttacc taagtctatg gaatgagtta actgagactc
      781 gtgttgaaga aagattggtt ttttctcatg gcgatatcac ggatagtaat atttttatag
      841 ataaattcaa tgaaatttac tttttagatc ttggccgtgc tgggttagct gatgaatttg
      901 tagatatatc ctttgttgaa cgttgcctaa gagaggatgc ctcggaggaa actgctaaaa
      961 tatttttaaa gcatttaaaa aatgatagac ctgacaaaag gaattatttt ttaaaacttg
     1021 atgaattgaa ttgattctaa gcattatcta aaaatactta attgtctttt aacgtcgcta
     1081 aattttaaat aaataagtga agagtgttag tggagccact gatttaaagt tggcagagta
     1141 aaacttgaag tgcgacataa accacctaat taatttaaag ggtttatgga gtatataaaa
     1201 ttgtcatacc atcatcttaa ctttgaagat cgtactgcat taatgcttga gtcaagaaaa
     1261 gaaggctttt cagccagaaa atttgctgaa ctcattaaaa gacatcctag tacgatctat
     1321 cgtgagctta aaagaaatag catcaatgac gtttatcaag ctcgatatgc ttctgataac
     1381 accttcgcta gacgtagacg tggtcacaga aaactcaaaa tcgattcaat cctctggaaa
     1441 tttattgttg aagcgatccg ttgtttatgg tctcctcagc aaatagcaaa gcgtttaaag
     1501 acatttcctg atttggatca aacaatgaat gtaagccata caacgattta ttcaacgata
     1561 cgagcattac caaagggtga gttgaaaaaa gacttattat cctgtctacg tcatgaaaat
     1621 aaaaagcgaa aagctaacgg tgaacctaaa aaagattcta tattacagga tattaaaact
     1681 attcatgagc gcccagccga agttcaagaa agaaaaatac cgggtcattg ggaagctgat
     1741 ttaattaaag gtaaagacaa taaaagttcg atagcaacac ttattgaacg aaatacacgg
     1801 ctctgtatct tggcaacatt acctgatgca aaggcagaat cagtgcgcaa ggctttaact
     1861 gaagctctga aatatttacc tgcagaactg cgtaaaacgt tgacctatga ccgtggacgt
     1921 gagatgtcag aacataaaat actcgaagaa gatttaggca tagatgtata tttctgtgac
     1981 ccacattcac cctggcaaaa aggcacatgc gaaaatatga atggtttaat taggcaatat
     2041 ttacctaaag ggattgattt aaatcaggca gatcagcatt atttaaatca agttgccatg
     2101 tcactgaata ctcgtcctag aaaggcgtta gattggctta caccattaga gaaatttgct
     2161 cagcttgttg attatcatat ggcttttgaa actgtcgcac ctcatgtttg aattcgcccc
     2221 atatttttgc tacagtgaac caaattaaga tcatctattt actaggcctc gcatttgcgg
     2281 ggtttttaat gctgaataaa aggaaaactt gatggaattg cccaatatta tgcacccggt
     2341 cgcgaagctg agcaccgcat tagccgctgc attgatgctg agcgggtgca tgcccggtga
     2401 aatccgcccg acgattggcc agcaaatgga aactggcgac caacggtttg gcgatctggt
     2461 tttccgccag ctcgcaccga atgtctggca gcacacttcc tatctcgaca tgccgggttt
     2521 cggggcagtc gcttccaacg gtttgatcgt cagggatggc ggccgcgtgc tggtggtcga
     2581 taccgcctgg accgatgacc agaccgccca gatcctcaac tggatcaagc aggagatcaa
     2641 cctgccggtc gcgctggcgg tggtgactca cgcgcatcag gacaagatgg gcggtatgga
     2701 cgcgctgcat gcggcgggga ttgcgactta tgccaatgcg ttgtcgaacc agcttgcccc
     2761 gcaagagggg atggttgcgg cgcaacacag cctgactttc gccgccaatg gctgggtcga
     2821 accagcaacc gcgcccaact ttggcccgct caaggtattt taccccggcc ccggccacac
     2881 cagtgacaat atcaccgttg ggatcgacgg caccgacatc gcttttggtg gctgcctgat
     2941 caaggacagc aaggccaagt cgctcggcaa tctcggtgat gccgacactg agcactacgc
     3001 cgcgtcagcg cgcgcgtttg gtgcggcgtt ccccaaggcc agcatgatcg tgatgagcca
     3061 ttccgccccc gatagccgcg ccgcaatcac tcatacggcc cgcatggccg acaagctgcg
     3121 ctgagccatg gctgaccacg tcacccccaa tctgccatcg cgcgatttcg atgtgacaga
     3181 ggcgttttat gcgaagctgg gctttgcgac gagttggaag gatcgcggct ggatgatcct
     3241 gcagcgcggc ggtttgcagc tcgaattctt cccctatcct gacctcgacc cagctacgag
     3301 ctcgttcggc tgttgcctgc ggttggatga tctcgatgcc atggtggcat tggtgaacgc
     3361 ggcgggagcc gaggaaaaaa gcaccggctg gccgcgcttc aaagctccgc aactggaggc
     3421 gagcggcctg aggatcggct acctgatcga tcccgactgc acgctggtgc ggctgatcca
     3481 gaaccccgac tgaccgcatg cccgcgaaaa tcaagatttg cgggatcagc acacccgagg
     3541 cgctcgatgc gaccatcgcg gcgcgggcgg actatgccgg gttggtgttc tatccagcgt
     3601 cgccccgtgc ggttacgtcg aatgtcgcgg gcgctttgac atcgcgcgca gctggccaga
     3661 tcgccatggt cggtttgttc gtcgatgcgg atgatgctgt catcgccgac gcactggtgg
     3721 cagccaagct gaacgcgctg cagctgcacg gttcggaatc gcccgaacgc gtggcccagt
     3781 tgcgcgcgcg gtttggcaag ccggtgtgga aggcgctgcc cgtcgccagc gccagcgatg
     3841 tcgcacgcgc cgcagcctat gccggggcgg cggacttgat cttgttcgac gccaagaccc
     3901 ccaaaggcgc gctgcccggc ggcatggggt tggcgttcga ctggtcgctg ctggccggat
     3961 atcgcggtgc cttgccgtgg gggctggcag gcgggctaaa tccgacgaat gttgccgagg
     4021 cgattgcgcg caccggagcg ccgctggtcg atacctccag cggcgtcgaa agcgcgccgg
     4081 gcgtcaagga taccgacaag attaccaatt tcgcctttgc ggtgcgcttg gcctaaatcg
     4141 cgtcgatcaa taggcgtcgt tcagcgcaaa gatcggcttg cgggtgcgcc actgccctcg
     4201 ggtgaagtcg ggaaaatcta acgtgcgatt gccctcagca atcgattgtt ccgacagagg
     4261 cgtgatcgcg ctccaggcca gcgcgtcgta aatgtcgatt ggcatcgggg ccttggcctt
     4321 cagcgcctcg acaaaagcgt ggatcacgaa ccagtccatc ccgccatgcc cggcccctgc
     4381 cgccagatcg gcgtagcgtt tccatagcgg gtgatcgtat ttcgcaaacc agccctcggc
     4441 aggctcccag cggtgcggct gtgggctctt gccctccaga tagatcgact tgttgacgtc
     4501 catccacagc ccctcggtgc cttgcacccg aaagccgaga gaataggggc gcggcagcga
     4561 ggtgtcgtgg cacagcatga tcgtttcacc attagtgcag ccgatcatgg tgttgaccac
     4621 atcacccagt gcgaatttca cctcggcgtt gggatgatcg gcagagccgt tcttgacgac
     4681 ataatcatgc agcccgcgcg ccttacagcc gaagccgcca gcgcccgctt cgcccggcaa
     4741 cgcgaccttc agggtgcggg tctgcggcgg gtagcacacg ccggcatcgg cgcagccctg
     4801 gtacttcacg gtcagggtgg tcgcgctcgc gccggccgcg ggcgtgccgg tgagggtgcc
     4861 gagcaattcc ttgcggtagg tttcgacgtc gccgaagaat tcgtcgcggt aggccttgcc
     4921 cttcggcagc gccatggtcg cgccggtgaa ggcggcatcg gccttgaccg aggtgcggtg
     4981 ccggtacagg taatagccgt cggcgatccg ccagcgcacc tcgatgcggt ccggcgcggt
     5041 ggcctgcgcg gacaggacga agacctcgtc gaccggcggc agttcgaagt cctgggcgac
     5101 ggccgaggtc gcgggcagcg caagcagcag ggcgagcccg gccagccagc ggcgcaggcg
     5161 gatcgtggat gcggtcattg gctcagttta ccggtcggct ctcggcggcc agccattgca
     5221 ggtattcggg caggccggac gcggcttcga ccgcgagcag ctccgggagt tcgtagggat
     5281 atagtatttt attaaattct tatgggaaat gacgaatgtt aaattatctt aagagcttta
     5341 ataatatcaa tacttatttg attttatcga taattctgct gttaatcata atatctctag
     5401 attatttcta aactgaatga atgtttataa tgagtgattc atattgctat tgaaatcgcc
     5461 ttctcacttt gaaagaaggc gaggatgagg gacttttatg ttgaattatc attttaaaaa
     5521 tgccttataa aagaagctta atgtgttttc ttatataggt ttaaacataa ttgttgtata
     5581 tcttaaatcc aattgatctt aaaattttcc tttatttttt gttatgagtg cgagaaaatt
     5641 gtcaaaaagg tcaatcagac tgggcgttaa tttgttttgc atactttttc ctatatcgaa
     5701 ttaaagtcat ataactaaca ccataatctt tagctatttg agtgaaaggg tatgaatcgt
     5761 ccttattttt aagggtatga attaactctt ttagtttttc ttctgtaatc gcaggcgatc
     5821 ttcccttgta tttacctttc ttttttttag ctaatttaat tccctctgct tgattctcac
     5881 taataatacc cctttcaagt tcagctacag cgcctaatac atggagttga aacttatcga
     5941 acttgtcatc tgaattgggg gtaaagttca ggttattttt gacaatatga acagacactc
     6001 cttttttatt tagcttttga acaatggtta caaggtcaat caagctacgt gccaatctaa
     6061 aaacatcatg agcgtacaca atgtccccac tacggacata atcgaacatt tcctgaagtg
     6121 cagggcgttt ggcagtcttt ccgctaaaat gatcaataaa agttttatct agctcaaagg
     6181 gtagatcatg gagctgtctt tcagggtttt ggtctttagt ggatacacgg atatacccca
     6241 ctctttgaaa gggtgtgttt ttaatttgat cttcaatatc taaattttct ttttccataa
     6301 ccagtataac aaaattagat aacctcaatg ttatatcaca ttagattaac aaaacaaccc
     6361 tattgttata gggtttttag ggtgtattat tatataacaa tagggtatac cctattgtta
     6421 tatatcttca ggtataagga aaaataacga tgattaattt taatgatcta agcgaatctg
     6481 aattattaag gattgcacag actggcatat caaaccgtat aggattgcgt acttcaggac
     6541 attg
//