Mercurial > repos > public-health-bioinformatics > pick_plasmids_containing_genes

comparison test-data/SRR9113487_plasmid_1550_abricate_report.tsv @ 0:62019f5116f8 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
author public-health-bioinformatics
date Tue, 12 Nov 2019 22:20:54 -0500
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-1:000000000000 0:62019f5116f8
1 #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
2 plasmid_1550 SRR9113487.fasta|65_length=4058_depth=2.47x 2638 3513 - CTX-M-15 1-876/876 =============== 0/0 100.00 100.00 card AY044436:1436-2312 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin
3 plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 1 442 - catB3 1-442/633 ===========.... 0/0 69.83 100.00 card JX101693.1:58201-58834 catB3 is a plasmid or chromosome-encoded variant of the cat gene found in Salmonella typhimurium Acinetobacter baumannii and Escherichia coli phenicol
4 plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 580 1410 - OXA-1 1-831/831 =============== 0/0 100.00 100.00 card JN420336.1:1400-2231 OXA-1 is a beta-lactamase found in E. coli penam/cephalosporin
5 plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 1475 2124 - OXA-368 2072-2721/2721 ...........==== 0/0 23.89 99.08 card KT736121.1:1-2722 OXA-368 is a beta-lactamase found in Aeromonas sobria. From the Lahey list of OXA beta-lactamases. cephalosporin/penam