Mercurial > repos > public-health-bioinformatics > pick_plasmids_containing_genes
view test-data/concatenated_abricate_reports.tsv @ 1:c9129ecc609d draft default tip
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit e732b47aa50e35cd4cb70df263d21c5987cae697"
author | public-health-bioinformatics |
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date | Thu, 19 Dec 2019 18:22:33 -0500 |
parents | 62019f5116f8 |
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#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE plasmid_1550 SRR9113487.fasta|65_length=4058_depth=2.47x 2638 3513 - CTX-M-15 1-876/876 =============== 0/0 100.00 100.00 card AY044436:1436-2312 CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family cephalosporin plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 1 442 - catB3 1-442/633 ===========.... 0/0 69.83 100.00 card JX101693.1:58201-58834 catB3 is a plasmid or chromosome-encoded variant of the cat gene found in Salmonella typhimurium Acinetobacter baumannii and Escherichia coli phenicol plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 580 1410 - OXA-1 1-831/831 =============== 0/0 100.00 100.00 card JN420336.1:1400-2231 OXA-1 is a beta-lactamase found in E. coli penam/cephalosporin plasmid_1550 SRR9113487.fasta|77_length=2186_depth=3.14x 1475 2124 - OXA-368 2072-2721/2721 ...........==== 0/0 23.89 99.08 card KT736121.1:1-2722 OXA-368 is a beta-lactamase found in Aeromonas sobria. From the Lahey list of OXA beta-lactamases. cephalosporin/penam #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 496 1308 + NDM-5 1-813/813 =============== 0/0 100.00 100.00 card JN104597:115-928 New Delhi beta-lactamase NDM-5. cephamycin/penam/cephalosporin/carbapenem plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 1312 1677 + determinant_of_bleomycin_resistance 1-366/366 =============== 0/0 100.00 100.00 card KC503911.1:9884-10250 A novel bleomycin resistance protein encoded by a metallo-beta-lactamase-associated ble gene. Expression of BRP(MBL) confers resistance to bleomycin and bleomycin-like antibiotics in Enterobacteriaceae and Acinetobacter where it is co-expressed with an MBL and controlled by the same promoter region. glycopeptide plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 5621 6460 - sul1 1-840/840 =============== 0/0 100.00 100.00 card JF969163:1054-1894 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 6965 7744 - aadA2 1-780/780 =============== 0/0 100.00 99.87 card AF156486:5013-5793 aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. aminoglycoside plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 8164 8661 - dfrA12 1-498/498 =============== 0/0 100.00 100.00 card GU585907.1:21606-22104 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine plasmid_2719 SRR9113487.fasta|53_length=9674_depth=5.42x 8662 8910 - AAC(6')-Ib7 1-249/980 ====........... 0/0 25.41 98.80 card Y11946.1:1-981 AAC(6')-Ib7 is a plasmid-encoded aminoglycoside acetyltransferase in E. cloacae and C. freundii aminoglycoside #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE plasmid_739 SRR9113487.fasta|58_length=8070_depth=5.28x 70 972 + mphA 1-903/906 =============== 0/0 99.67 100.00 card D16251.1:1626-2532 The mphA gene encodes for resistance enzyme MPH(2')-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2'-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide plasmid_739 SRR9113487.fasta|58_length=8070_depth=5.28x 5102 5962 + TEM-1 1-861/861 =============== 0/0 100.00 99.88 card AL513383:161911-162772 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. penam/cephalosporin/penem/monobactam plasmid_739 SRR9113487.fasta|58_length=8070_depth=5.28x 6132 6887 + rmtB 1-756/756 =============== 0/0 100.00 100.00 card AM886293.1:116480-117236 RmtB is a 16S rRNA methyltransferase that targets mature or nearly mature 30S subunits. It transfers a methyl group from S-adenosyl-L-methionine to N7-G1405 of the 16S rRNA an aminoglycoside binding site. aminoglycoside #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE #FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE